Domain ID e2o1xD4

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: Transket_pyr
UID: 001278255
Type: Automatic domain
Parent: e2r8oA2
Range: D:322-492
Ligands: TDP
PDB: 2o1x
PDB Description: 1-deoxy-D-xylulose-5-phosphate synthase
UniProt: Q9RUB5
Hsap BLAST neighbor: P29401
Species: Deinococcus radiodurans

Structure of domain e2o1xD4

Domains in the same chain:

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e2o1xD3 D:17-191,D:245-290 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1xD4 D:322-492 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1xD1 D:493-629 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like

Domains in the same PDB:

e2o1xA5 A:5-198,A:244-318 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1xA6 A:319-492 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1xA2 A:493-627 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2o1xB3 B:8-198,B:243-318 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1xB4 B:319-492 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1xB1 B:493-629 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2o1xC3 C:7-190,C:245-290 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1xC4 C:322-492 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1xC2 C:493-628 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like
e2o1xD3 D:17-191,D:245-290 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1xD4 D:322-492 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2o1xD1 D:493-629 TK C-terminal domain-like TK C-terminal domain-like TK C-terminal domain-like

Structural contacts of domain e2o1xD4 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2o1xC2 D:x,y,z->C:X,Y,Z TK C-terminal domain-like Interaction Interface Pymol
e2o1xC3 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2o1xC4 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2o1xB4 D:x,y,z->B:-X+1,Y-1/2,-Z+1 Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol