ECOD: domain e2o8rA1

Domain ID e2o8rA1

A: alpha bundles
X: Spectrin repeat-like
H: PPK N-terminal domain-like
T: PPK N-terminal domain-like
F: PP_kinase_N

UID:	000003843
Type:	Manual and representative domain
Range:	A:4-112
Ligands:	SO4
PDB:	2o8r
PDB Description:	Polyphosphate kinase
UniProt:	Q7MTR1
Species:	Porphyromonas gingivalis

Domain
In chain context
In PDB context

Structure of domain e2o8rA1

Domains in the same chain:

Download Pymol

e2o8rA1	A:4-112	Spectrin repeat-like	PPK N-terminal domain-like	PPK N-terminal domain-like
e2o8rA2	A:113-242,A:264-317	PHP14-like	PHP14-like	PHP14-like
e2o8rA3	A:318-505	Phospholipase D/nuclease	Phospholipase D/nuclease	Phospholipase D/nuclease
e2o8rA4	A:506-691	Phospholipase D/nuclease	Phospholipase D/nuclease	Phospholipase D/nuclease

Domains in the same PDB:

e2o8rA1	A:4-112	Spectrin repeat-like	PPK N-terminal domain-like	PPK N-terminal domain-like
e2o8rA2	A:113-242,A:264-317	PHP14-like	PHP14-like	PHP14-like
e2o8rA3	A:318-505	Phospholipase D/nuclease	Phospholipase D/nuclease	Phospholipase D/nuclease
e2o8rA4	A:506-691	Phospholipase D/nuclease	Phospholipase D/nuclease	Phospholipase D/nuclease
e2o8rB1	B:11-57,B:82-112	Spectrin repeat-like	PPK N-terminal domain-like	PPK N-terminal domain-like
e2o8rB2	B:113-234,B:264-317	PHP14-like	PHP14-like	PHP14-like
e2o8rB3	B:318-505	Phospholipase D/nuclease	Phospholipase D/nuclease	Phospholipase D/nuclease
e2o8rB4	B:506-690	Phospholipase D/nuclease	Phospholipase D/nuclease	Phospholipase D/nuclease

Structural contacts of domain e2o8rA1 of H-group "PPK N-terminal domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2o8rB4	A:X,Y-1,Z->B:x,y,z	Phospholipase D/nuclease	Interaction Interface Pymol
e2o8rA3	A:x,y,z->A:X-Y,X,Z-1/6	Phospholipase D/nuclease	Interaction Interface Pymol