| UID: | 001771512 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1h8d.1 |
| Range: | A:1C-15,B:16-243 |
| Ligands: | NA PO4 |
| PDB: | 2ody |
| PDB Description: | PROTHROMBIN (EC 3.4.21.5) |
| UniProt: | P00735 |
| Hsap BLAST neighbor: | P00734 |
| Species: |
Structure of domain e2ody.1
Domains in the same chain:
| e2ody.1 | A:1C-15,B:16-243 | cradle loop barrel | RIFT-related | FMN-binding split barrel |
Domains in the same PDB:
| e2ody.1 | A:1C-15,B:16-243 | cradle loop barrel | RIFT-related | FMN-binding split barrel |
| e2ody.3 | C:1C-14L,D:16-243 | cradle loop barrel | RIFT-related | FMN-binding split barrel |
| e2odyE1 | E:16-75 | BPTI-like | BPTI-like | BPTI-like |
| e2odyE2 | E:78-142 | BPTI-like | BPTI-like | BPTI-like |
| e2odyF1 | F:16-77 | BPTI-like | BPTI-like | BPTI-like |
| e2odyF2 | F:78-142 | BPTI-like | BPTI-like | BPTI-like |
Structural contacts of domain e2ody.1 of H-group "RIFT-related":
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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e2odyE2 | B:X,Y,Z->E:x,y,z | BPTI-like | Interaction Interface Pymol |
| e2odyE1 | B:X,Y,Z->E:x,y,z | BPTI-like | Interaction Interface Pymol |
| e2ody.1 | B:x,y,z->A:X,Y,Z | RIFT-related | Interaction Interface Pymol |
| e2ody.1 | A:X,Y,Z->B:x,y,z | RIFT-related | Interaction Interface Pymol |
| e2odyF1 | B:X-1/2,-Y+3/2,-Z+1->F:x,y,z | BPTI-like | Interaction Interface Pymol |
| e2odyF2 | B:X-1/2,-Y+3/2,-Z+1->F:x,y,z | BPTI-like | Interaction Interface Pymol |
| e2ody.3 | B:X-1/2,-Y+3/2,-Z+1->D:x,y,z | RIFT-related | Interaction Interface Pymol |
| e2ody.1 | A:x,y,z->B:X-1/2,-Y+3/2,-Z+1 | RIFT-related | Interaction Interface Pymol |
| e2ody.1 | B:X-1/2,-Y+3/2,-Z+1->A:x,y,z | RIFT-related | Interaction Interface Pymol |
| e2ody.3 | B:x,y,z->D:-X+1,Y-1/2,-Z+3/2 | RIFT-related | Interaction Interface Pymol |
| e2odyE1 | A:x,y,z->E:X-1/2,-Y+3/2,-Z+1 | BPTI-like | Interaction Interface Pymol |
| e2odyF2 | A:X-1/2,-Y+3/2,-Z+1->F:x,y,z | BPTI-like | Interaction Interface Pymol |
| e2odyE1 | B:x,y,z->E:X-1/2,-Y+3/2,-Z+1 | BPTI-like | Interaction Interface Pymol |
| e2ody.3 | A:X,Y,Z->D:x,y,z | RIFT-related | Interaction Interface Pymol |
| e2ody.3 | B:x,y,z->C:X,Y,Z | RIFT-related | Interaction Interface Pymol |
| e2odyF2 | A:X,Y,Z->F:x,y,z | BPTI-like | Interaction Interface Pymol |
| e2ody.1 | B:x,y,z->B:X-1/2,-Y+3/2,-Z+1 | RIFT-related | Interaction Interface Pymol |
| e2ody.1 | B:X-1/2,-Y+3/2,-Z+1->B:x,y,z | RIFT-related | Interaction Interface Pymol |
