Domain ID e2opqB1

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  • A: alpha bundles
  • X: helical bundle domain in reverse transcriptase-like polymerases
  • H: helical bundle domain in reverse transcriptase-like polymerases
  • T: helical bundle domain in reverse transcriptase-like polymerases
  • F: RVT_thumb
UID: 000054745
Type: Automatic domain
Parent: e2zd1B1
Range: B:242-315
Ligands: PO4
PDB: 2opq
PDB Description: p51 RT
UniProt: P04585
Species:

Structure of domain e2opqB1

Domains in the same chain:

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e2opqB2 B:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2opqB1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2opqB3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Domains in the same PDB:

e2opqA11 A:4-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2opqA10 A:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2opqA9 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e2opqA12 A:429-537 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2opqB2 B:5-241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2opqB1 B:242-315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2opqB3 B:316-427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e2opqB1 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2opqA12 B:x,y,z->A:X,Y,Z Ribonuclease H-like Interaction Interface Pymol
e2opqA12 B:x,y,z->A:-X+1/2,-Y,Z-1/2 Ribonuclease H-like Interaction Interface Pymol
e2opqA9 B:x,y,z->A:-X+1/2,-Y,Z-1/2 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e2opqA10 B:x,y,z->A:-X+1/2,-Y,Z-1/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol