Domain ID e2oprA8

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: RVT_1
UID: 001186931
Type: Automatic domain
Parent: e1ztwA1
Range: A:2-242
Ligands: HBQ
PDB: 2opr
PDB Description: Reverse transcriptase/ribonuclease H
UniProt: P04585
Hsap BLAST neighbor: P63135
Species:

Structure of domain e2oprA8

Domains in the same chain:

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e2oprA8 A:2-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2oprA7 A:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2oprA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e2oprA6 A:429-548 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e2oprA8 A:2-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2oprA7 A:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2oprA5 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e2oprA6 A:429-548 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2oprB4 B:6-212,B:233-242 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2oprB6 B:243-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2oprB5 B:317-431 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e2oprA8 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2oprB4 A:X,Y,Z->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2oprA5 A:x,y,z->A:-X,Y-1/2,-Z+1/2 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e2oprA6 A:x,y,z->A:-X,Y-1/2,-Z+1/2 Ribonuclease H-like Interaction Interface Pymol
e2oprA7 A:x,y,z->A:-X,Y-1/2,-Z+1/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e2oprB4 A:-X+1/2,-Y-1,Z-1/2->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2oprA5 A:X,Y,Z-1->A:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e2oprA7 A:x,y,z->A:-X,Y-1/2,-Z+3/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e2oprB5 A:X,Y,Z-1->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e2oprB4 A:X,Y,Z-1->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2oprB5 A:x,y,z->B:X-1/2,-Y-1/2,-Z+1 RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e2oprA6 A:-X+1/2,-Y,Z-1/2->A:x,y,z Ribonuclease H-like Interaction Interface Pymol