| UID: | 001549024 |
|---|---|
| Type: | Manual and representative domain |
| Range: | A:224-391 |
| PDB: | 2ot3 |
| PDB Description: | Rab5 GDP/GTP exchange factor |
| UniProt: | Q9UJ41 |
| Hsap BLAST neighbor: | Q9UJ41 |
| Species: | Homo sapiens |
Structure of domain e2ot3A2
Domains in the same chain:
| e2ot3A1 | A:139-223 | Bromodomain-like | RABEX-5 helical domain | RABEX-5 helical domain |
| e2ot3A2 | A:224-391 | VPS9 domain | VPS9 domain | VPS9 domain |
Domains in the same PDB:
Structural contacts of domain e2ot3A2 of H-group "VPS9 domain":
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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e2ot3B1 | A:X,Y,Z->B:x,y,z | P-loop domains-related | Interaction Interface Pymol |
| e2ot3A2 | A:x,y,z->A:-X,-Y,Z | VPS9 domain | Interaction Interface Pymol |
| e2ot3A2 | A:-X,-Y,Z->A:x,y,z | VPS9 domain | Interaction Interface Pymol |
| e2ot3B1 | A:x,y,z->B:X-1/2,-Y+1/2,-Z | P-loop domains-related | Interaction Interface Pymol |
| e2ot3B1 | A:X-1/2,-Y+1/2,-Z->B:x,y,z | P-loop domains-related | Interaction Interface Pymol |
| e2ot3B1 | A:x,y,z->B:-X+1/2,Y-1/2,-Z | P-loop domains-related | Interaction Interface Pymol |
| e2ot3A1 | A:X-1/2,-Y+1/2,-Z-1->A:x,y,z | RABEX-5 helical domain | Interaction Interface Pymol |
| e2ot3A1 | A:X,Y,Z-1->A:x,y,z | RABEX-5 helical domain | Interaction Interface Pymol |
