ECOD: domain e2ozmA3

Domain ID e2ozmA3

A: a+b two layers
X: Alpha-beta plaits
H: Adenylyl and guanylyl cyclase catalytic domain-like
T: Adenylyl and guanylyl cyclase catalytic domain-like
F: DNA_pol_B

UID:	000066017
Type:	Automatic domain
Parent:	e1tgoA4
Range:	A:376-467,A:574-731
Ligands:	MG N5P
PDB:	2ozm
PDB Description:	DNA polymerase
UniProt:	Q38087
Species:	Enterobacteria phage RB69

Domains in the same chain:

Download Pymol

e2ozmA4	A:1-375	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e2ozmA3	A:376-467,A:574-731	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2ozmA1	A:468-573	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e2ozmA2	A:732-902	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2ozmA4	A:1-375	Ribonuclease H-like	Ribonuclease H-like	Ribonuclease H-like
e2ozmA3	A:376-467,A:574-731	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	Adenylyl and guanylyl cyclase catalytic domain-like
e2ozmA1	A:468-573	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I	"fingers" domain in bacteriophage RB69-like DNA polymerase I
e2ozmA2	A:732-902	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I	"thumb" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2ozmA3 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2ozmA4	A:-X,Y-1/2,-Z+1/2->A:x,y,z	Ribonuclease H-like	Interaction Interface Pymol
e2ozmA1	A:x,y,z->A:X-1/2,-Y+1/2,-Z	"fingers" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e2ozmA2	A:X-1/2,-Y+1/2,-Z->A:x,y,z	"thumb" domain in bacteriophage RB69-like DNA polymerase I	Interaction Interface Pymol
e2ozmA4	A:x,y,z->A:-X+1/2,-Y+1,Z-1/2	Ribonuclease H-like	Interaction Interface Pymol