ECOD: domain e2pfoA3

Domain ID e2pfoA3

A: a+b three layers
X: Nucleotidyltransferase-like
H: Nucleotidyltransferase
T: Nucleotidyltransferase
F: DNA_pol_B_thumb,DNA_pol_B_palm

UID:	000078151
Type:	Automatic domain
Parent:	e2fmpA3
Range:	A:386-575
Ligands:	DUP EDO MG MN NA
PDB:	2pfo
PDB Description:	DNA polymerase lambda
UniProt:	Q9UGP5
Hsap BLAST neighbor:	Q9UGP5
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e2pfoA3

Domains in the same chain:

Download Pymol

e2pfoA2	A:253-327	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2pfoA1	A:329-385	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2pfoA3	A:386-575	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase

Domains in the same PDB:

e2pfoA2	A:253-327	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2pfoA1	A:329-385	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2pfoA3	A:386-575	Nucleotidyltransferase-like	Nucleotidyltransferase	Nucleotidyltransferase

Structural contacts of domain e2pfoA3 of H-group "Nucleotidyltransferase":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2pfoA1	A:X-1/2,-Y+1/2,-Z->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e2pfoA2	A:X,Y-1,Z->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e2pfoA2	A:-X+1,Y-1/2,-Z+1/2->A:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol