ECOD: domain e2pggA1

Domain ID e2pggA1

A: alpha bundles
X: helical bundle domain in reverse transcriptase-like polymerases
H: helical bundle domain in reverse transcriptase-like polymerases
T: helical bundle domain in reverse transcriptase-like polymerases
F: Birna_VP1_thumb

UID:	000003783
Type:	Manual and representative domain
Range:	A:536-706
PDB:	2pgg
PDB Description:	RNA-directed RNA polymerase
UniProt:	Q9Q6Q5
Species:	Infectious bursal disease virus

Domain
In chain context
In PDB context

Structure of domain e2pggA1

Domains in the same chain:

Download Pymol

e2pggA3	A:31-535	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2pggA1	A:536-706	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e2pggA2	A:707-804	Sigma2 domain-like	C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase	C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase

Domains in the same PDB:

e2pggA3	A:31-535	Alpha-beta plaits	Adenylyl and guanylyl cyclase catalytic domain-like	'palm' domain in birnaviruse RNA-dependent RNA polymerase
e2pggA1	A:536-706	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases	helical bundle domain in reverse transcriptase-like polymerases
e2pggA2	A:707-804	Sigma2 domain-like	C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase	C-terminal bundle domain in birnaviruse RNA-dependent RNA polymerase

Structural contacts of domain e2pggA1 of H-group "helical bundle domain in reverse transcriptase-like polymerases":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2pggA3	A:x,y,z->A:X-Y,-Y+1,-Z+2	Adenylyl and guanylyl cyclase catalytic domain-like	Interaction Interface Pymol