Domain ID e2pi4A5

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  • A: alpha arrays
  • X: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • H: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • T: helical bundle in Bacillus stearothermophilus-like DNA polymerase I
  • F: RNA_pol
UID: 001878094
Type: Automatic domain
Parent: e1mswD1
Range: A:553-779
Ligands: GH3
PDB: 2pi4
PDB Description: DNA-DIRECTED RNA POLYMERASE
UniProt: P00573
Hsap BLAST neighbor: O00411
Species: Enterobacteria phage T7

Structure of domain e2pi4A5

Domains in the same chain:

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e2pi4A4 A:6-262 HTH HTH HTH in T7 RNA polymerase
e2pi4A6 A:263-448 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2pi4A3 A:449-528 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e2pi4A1 A:529-552,A:780-883 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2pi4A5 A:553-779 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e2pi4A4 A:6-262 HTH HTH HTH in T7 RNA polymerase
e2pi4A6 A:263-448 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2pi4A3 A:449-528 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e2pi4A1 A:529-552,A:780-883 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2pi4A5 A:553-779 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e2pi4A5 of H-group "helical bundle in Bacillus stearothermophilus-like DNA polymerase I":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1mswD1 A:x,y,z->A:-X+2,-Y+1,Z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e1mswD1 A:-X+2,-Y+1,Z->A:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e2pi4A3 A:-X+3/2,Y-1/2,-Z+1->A:x,y,z inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e2pi4A3 A:-X+3/2,Y-1/2,-Z+1->A:x,y,z inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol
e2pi4A3 A:X,Y-1,Z->A:x,y,z inserted helical bundle subdomain in T7 RNA polymerase Interaction Interface Pymol