ECOD: domain e2pkdE1

Domain ID e2pkdE1

A: beta sandwiches
X: Immunoglobulin-like beta-sandwich
H: Immunoglobulin-related
T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like
F: Unmapped domains

UID:	000322632
Type:	Automatic domain
Parent:	e2nxyB1
Range:	E:3-111
Ligands:	CL
PDB:	2pkd
PDB Description:	SLAM family member 5
UniProt:	Q9UIB8
Hsap BLAST neighbor:	Q9UIB8
Species:	Homo sapiens

Domains in the same chain:

Download Pymol

e2pkdE1	E:3-111	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e2pkdA1	A:5-111	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2pkdB1	B:4-111	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2pkdC1	C:5-111	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2pkdD1	D:5-111	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2pkdE1	E:3-111	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2pkdF1	F:5-111	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e2pkdE1 of H-group "Immunoglobulin-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2pkdC1	E:x,y,z->C:X,Y,Z	Immunoglobulin-related	Interaction Interface Pymol
e2pkdF1	E:x,y,z->F:X-3/2,Y-1/2,Z	Immunoglobulin-related	Interaction Interface Pymol
e2pkdC1	E:x,y,z->C:-X,Y,-Z+1/2	Immunoglobulin-related	Interaction Interface Pymol
e2pkdE1	E:x,y,z->E:-X,Y,-Z+1/2	Immunoglobulin-related	Interaction Interface Pymol
e2pkdE1	E:-X,Y,-Z+1/2->E:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e2pkdA1	E:x,y,z->A:X-1,Y,Z	Immunoglobulin-related	Interaction Interface Pymol
e2pkdC1	E:x,y,z->C:X-1,Y,Z	Immunoglobulin-related	Interaction Interface Pymol