Domain ID e2pnlE3

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: Birna_VP4
UID: 001157442
Type: Automatic domain
Parent: e4izjA1
Range: E:514-650
Ligands: GAI
PDB: 2pnl
PDB Description: Protease VP4
UniProt: A1XQQ8
Species: Infectious pancreatic necrosis virus

Structure of domain e2pnlE3

Domains in the same chain:

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e2pnlE3 E:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2pnlE2 E:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains

Domains in the same PDB:

e2pnlA3 A:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2pnlA2 A:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e2pnlB3 B:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2pnlB2 B:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e2pnlC3 C:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2pnlC2 C:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e2pnlD3 D:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2pnlD2 D:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e2pnlE3 E:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2pnlE2 E:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e2pnlF3 F:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2pnlF2 F:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e2pnlG3 G:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2pnlG2 G:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e2pnlH3 H:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2pnlH2 H:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e2pnlI3 I:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2pnlI2 I:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains
e2pnlJ3 J:514-650 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2pnlJ2 J:651-716 C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains C-terminal subdomain in Lon-related proteases catalytic domains

Structural contacts of domain e2pnlE3 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2pnlD2 E:x,y,z->D:X,Y,Z C-terminal subdomain in Lon-related proteases catalytic domains Interaction Interface Pymol
e2pnlJ3 E:x,y,z->J:X-1,Y+1,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2pnlE3 E:x,y,z->E:X-1,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2pnlE3 E:X-1,Y,Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol