Domain ID e2po4A5

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  • A: a+b two layers
  • X: Alpha-beta plaits
  • H: Adenylyl and guanylyl cyclase catalytic domain-like
  • T: Adenylyl and guanylyl cyclase catalytic domain-like
  • F: vRNAP_dom
UID: 000338974
Type: Automatic and representative domain
Range: A:551-597,A:918-1104
PDB: 2po4
PDB Description: Virion RNA polymerase
UniProt: Q859P9
Species: Escherichia phage N4

Structure of domain e2po4A5

Domains in the same chain:

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e2po4A4 A:325-444 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2po4A3 A:445-550 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e2po4A5 A:551-597,A:918-1104 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2po4A1 A:598-917 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Domains in the same PDB:

e2po4A4 A:325-444 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2po4A3 A:445-550 inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase inserted helical bundle subdomain in T7 RNA polymerase
e2po4A5 A:551-597,A:918-1104 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2po4A1 A:598-917 helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I helical bundle in Bacillus stearothermophilus-like DNA polymerase I

Structural contacts of domain e2po4A5 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2po4A5 A:x,y,z->A:-X+1,Y-1/2,-Z+1/2 Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2po4A1 A:X-1/2,-Y+3/2,-Z->A:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e2po4A4 A:x,y,z->A:-X,Y-1/2,-Z+1/2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2po4A1 A:x,y,z->A:-X,Y-1/2,-Z+1/2 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e2po4A1 A:x,y,z->A:-X+1/2,-Y+1,Z-1/2 helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol