ECOD: domain e2pt9A2

Domain ID e2pt9A2

A: a/b three-layered sandwiches
X: Rossmann-like
H: Rossmann-related
T: S-adenosyl-L-methionine-dependent methyltransferases
F: Spermine_synth

UID:	001279174
Type:	Automatic domain
Parent:	e1inlA3
Range:	A:98-321
Ligands:	2MH GOL S4M
PDB:	2pt9
PDB Description:	Spermidine synthase
UniProt:	Q8II73
Hsap BLAST neighbor:	P19623
Species:

Domains in the same chain:

Download Pymol

e2pt9A3	A:41-97	Spermidine synthase tetramerisation domain	Spermidine synthase tetramerisation domain	Spermidine synthase tetramerisation domain
e2pt9A2	A:98-321	Rossmann-like	Rossmann-related	S-adenosyl-L-methionine-dependent methyltransferases

Domains in the same PDB:

e2pt9A3	A:41-97	Spermidine synthase tetramerisation domain	Spermidine synthase tetramerisation domain	Spermidine synthase tetramerisation domain
e2pt9A2	A:98-321	Rossmann-like	Rossmann-related	S-adenosyl-L-methionine-dependent methyltransferases
e2pt9B3	B:41-97	Spermidine synthase tetramerisation domain	Spermidine synthase tetramerisation domain	Spermidine synthase tetramerisation domain
e2pt9B2	B:98-320	Rossmann-like	Rossmann-related	S-adenosyl-L-methionine-dependent methyltransferases
e2pt9C3	C:41-96	Spermidine synthase tetramerisation domain	Spermidine synthase tetramerisation domain	Spermidine synthase tetramerisation domain
e2pt9C2	C:97-320	Rossmann-like	Rossmann-related	S-adenosyl-L-methionine-dependent methyltransferases

Structural contacts of domain e2pt9A2 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2pt9A2	A:x,y,z->A:-X,Y,-Z	Rossmann-related	Interaction Interface Pymol
e2pt9A3	A:x,y,z->A:-X,Y,-Z	Spermidine synthase tetramerisation domain	Interaction Interface Pymol
e2pt9A2	A:-X,Y,-Z->A:x,y,z	Rossmann-related	Interaction Interface Pymol
e2pt9A3	A:-X,Y,-Z->A:x,y,z	Spermidine synthase tetramerisation domain	Interaction Interface Pymol
e2pt9C2	A:x,y,z->C:-X+1/2,Y-1/2,-Z+1	Rossmann-related	Interaction Interface Pymol
e2pt9B2	A:X,Y,Z->B:x,y,z	Rossmann-related	Interaction Interface Pymol
e2pt9B3	A:X,Y,Z->B:x,y,z	Spermidine synthase tetramerisation domain	Interaction Interface Pymol
e2pt9A2	A:x,y,z->A:X,Y,Z-1	Rossmann-related	Interaction Interface Pymol
e2pt9A2	A:X,Y,Z-1->A:x,y,z	Rossmann-related	Interaction Interface Pymol
e2pt9B3	A:x,y,z->B:X,Y,Z-1	Spermidine synthase tetramerisation domain	Interaction Interface Pymol