Domain ID e2pzsD1

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  • A: alpha bundles
  • X: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • H: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • T: "fingers" domain in bacteriophage RB69-like DNA polymerase I
  • F: DNA_pol_B_2
UID: 000057762
Type: Automatic domain
Parent: e2py5A1
Range: D:359-423
PDB: 2pzs
PDB Description: DNA polymerase
UniProt: P03680
Species: Bacillus phage phi29

Structure of domain e2pzsD1

Domains in the same chain:

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e2pzsD4 D:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2pzsD2 D:188-261,D:424-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2pzsD3 D:262-358 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2pzsD1 D:359-423 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I

Domains in the same PDB:

e2pzsA4 A:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2pzsA2 A:188-261,A:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2pzsA3 A:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2pzsA1 A:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2pzsB4 B:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2pzsB2 B:188-261,B:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2pzsB3 B:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2pzsB1 B:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2pzsC4 C:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2pzsC2 C:188-261,C:423-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2pzsC3 C:262-357 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2pzsC1 C:358-422 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I
e2pzsD4 D:5-187 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2pzsD2 D:188-261,D:424-574 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2pzsD3 D:262-358 insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase insertion domain in bacteriophage phi29 DNA polymerase
e2pzsD1 D:359-423 "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I "fingers" domain in bacteriophage RB69-like DNA polymerase I

Structural contacts of domain e2pzsD1 of H-group ""fingers" domain in bacteriophage RB69-like DNA polymerase I":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2pzsD1 D:x,y,z->D:-X-1,Y,-Z-2 "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2pzsD1 D:-X-1,Y,-Z-2->D:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol
e2pzsC4 D:x,y,z->C:-X-1,Y,-Z-1 Ribonuclease H-like Interaction Interface Pymol