Domain ID e2q6dA1

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: FMN-binding split barrel
  • F: Peptidase_C30
UID: 001103976
Type: Automatic domain
Parent: e2ducA2
Range: A:1-184
PDB: 2q6d
PDB Description: INFECTIOUS BRONCHITIS VIRUS (IBV) MAIN PROTEASE
UniProt: P0C6Y3
Species:

Structure of domain e2q6dA1

Structural contacts of domain e2q6dA1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2q6dB2 A:X,Y,Z->B:x,y,z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e2q6dB1 A:X,Y,Z->B:x,y,z RIFT-related Interaction Interface Pymol
e2q6dC1 A:X-Y+1,X,Z+1/6->C:x,y,z RIFT-related Interaction Interface Pymol
e2q6dC2 A:X-Y+1,X,Z+1/6->C:x,y,z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e2q6dC2 A:X,Y,Z->C:x,y,z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e2q6dC1 A:X,Y,Z->C:x,y,z RIFT-related Interaction Interface Pymol
e2q6dB2 A:X-Y,-Y+1,-Z->B:x,y,z Coronavirus main proteinase (3Cl-pro, putative coronavirus nsp2) C-terminal domain Interaction Interface Pymol
e2q6dB1 A:X-Y,-Y+1,-Z->B:x,y,z RIFT-related Interaction Interface Pymol
e2q6dB1 A:-Y+1,-X+1,-Z-1/6->B:x,y,z RIFT-related Interaction Interface Pymol