Domain ID e2qbgE1

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  • A: a/b three-layered sandwiches
  • X: Ribosomal protein L4
  • H: Ribosomal protein L4
  • T: Ribosomal protein L4
  • F: Ribosomal_L4
UID: 000109947
Type: Automatic domain
Parent: e1dmgA1
Range: E:1-198
PDB: 2qbg
PDB Description:
Hsap BLAST neighbor: Q9BYD3
Species:

Structure of domain e2qbgE1

Domains in the same chain:

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e2qbgE1 E:1-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4

Domains in the same PDB:

e2qbg01 0:1-56 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2qbg21 2:1-46 50S ribosomal protein L34 50S ribosomal protein L34 50S ribosomal protein L34
e2qbg31 3:1-64 Ribosomal protein L35p Ribosomal protein L35p Ribosomal protein L35p
e2qbg41 4:1-38 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36
e2qbg61 6:3-185 RRF/tRNA synthetase additional domain-like Ribosome recycling factor, RRF Ribosome recycling factor, RRF
e2qbgC3 C:1-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2qbgC4 C:125-271 SH3 SH3 SH3
e2qbgE1 E:1-198 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4
e2qbgF1 F:1-178 Ribosomal protein L5 Ribosomal protein L5 Ribosomal protein L5
e2qbgG2 G:1-81 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2qbgG1 G:82-170 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6
e2qbgH2 H:1-52 L9 N-domain-like L9 N-domain-like L9 N-domain-like
e2qbgI3 I:1-73 Ribosomal protein L11/L12e N-terminal domain-like Ribosomal protein L11/L12e N-terminal domain Ribosomal protein L11/L12e N-terminal domain
e2qbgI4 I:74-141 HTH HTH Ribosomal protein L11, C-terminal domain
e2qbgJ1 J:1-140 Ribosomal protein L13/L15p/L18e/L32e Ribosomal protein L13 and L16-A Ribosomal protein L13 and L16-A
e2qbgK1 K:2-122 Ribosomal protein L14-like Ribosomal protein L14-related Ribosomal protein L14-related
e2qbgN1 N:14-117 Enolase-N/ribosomal protein Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17
e2qbgR1 R:1-103 Ribosomal protein L21p Ribosomal protein L21p Ribosomal protein L21p
e2qbgS1 S:1-110 Enolase-N/ribosomal protein Ribosomal protein L22 Ribosomal protein L22
e2qbgT1 T:6-93 Alpha-beta plaits Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e
e2qbgU2 U:1-102 SH3 SH3 SH3
e2qbgV1 V:1-94 Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like
e2qbgW1 W:19-84 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Ribosomal L27 protein
e2qbgX2 X:1-63 Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p)
e2qbgY1 Y:1-58 Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e
e2qbgZ1 Z:2-78 Ribosomal protein bL28-related Ribosomal protein bL28-related Ribosomal protein L28

Structural contacts of domain e2qbgE1 of H-group "Ribosomal protein L4":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1dmgA1 E:X,Y,Z->L:x,y,z Ribosomal protein L4 Interaction Interface Pymol