ECOD: domain e2qd8A1

Domain ID e2qd8A1

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: acid protease
F: RVP

UID:	000020348
Type:	Automatic domain
Range:	A:1-99
Ligands:	065 ACT CL NA
PDB:	2qd8
PDB Description:	Protease
UniProt:	P03367
Species:	Human immunodeficiency virus 1

Structural contacts of domain e2qd8A1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2qd8B1	A:X,Y,Z->B:x,y,z	RIFT-related	Interaction Interface Pymol
e2qd8B1	A:X-1/2,-Y+1/2,-Z+1->B:x,y,z	RIFT-related	Interaction Interface Pymol
e2qd8B1	A:-X+1/2,Y-1/2,-Z+1->B:x,y,z	RIFT-related	Interaction Interface Pymol
e2qd8B1	A:x,y,z->B:X,Y,Z-1	RIFT-related	Interaction Interface Pymol
e2qd8B1	A:x,y,z->B:X-1/2,-Y+1/2,-Z+1	RIFT-related	Interaction Interface Pymol
e2qd8A1	A:x,y,z->A:X-1/2,-Y+1/2,-Z+1	RIFT-related	Interaction Interface Pymol
e2qd8A1	A:X-1/2,-Y+1/2,-Z+1->A:x,y,z	RIFT-related	Interaction Interface Pymol

e2qd8A1	A:1-99	cradle loop barrel	RIFT-related	acid protease
e2qd8B1	B:101-199	cradle loop barrel	RIFT-related	acid protease