Domain ID e2qmiD3

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  • A: beta barrels
  • X: Lipocalins/Streptavidin
  • H: D-aminopeptidase, middle and C-terminal domains
  • T: D-aminopeptidase, middle and C-terminal domains
  • F: Pab87_oct
UID: 001833891
Type: Automatic and representative domain
Parent: e1ei5A1
Range: D:358-446
PDB: 2qmi
PDB Description: Pbp related beta-lactamase
UniProt: Q9V2D6
Species: Pyrococcus abyssi

Structure of domain e2qmiD3

Domains in the same chain:

e2qmiD2 D:1-55,D:239-357 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2qmiD1 D:55-238 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2qmiD3 D:358-446 Lipocalins/Streptavidin D-aminopeptidase, middle and C-terminal domains D-aminopeptidase, middle and C-terminal domains

Domains in the same PDB:

e2qmiA2 A:1-55,A:239-354 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2qmiA1 A:55-238 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2qmiA3 A:355-447 Lipocalins/Streptavidin D-aminopeptidase, middle and C-terminal domains D-aminopeptidase, middle and C-terminal domains
e2qmiB2 B:1-55,B:239-356 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2qmiB1 B:55-238 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2qmiB3 B:357-447 Lipocalins/Streptavidin D-aminopeptidase, middle and C-terminal domains D-aminopeptidase, middle and C-terminal domains
e2qmiC2 C:1-55,C:239-357 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2qmiC1 C:55-238 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2qmiC3 C:358-446 Lipocalins/Streptavidin D-aminopeptidase, middle and C-terminal domains D-aminopeptidase, middle and C-terminal domains
e2qmiD2 D:1-55,D:239-357 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2qmiD1 D:55-238 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2qmiD3 D:358-446 Lipocalins/Streptavidin D-aminopeptidase, middle and C-terminal domains D-aminopeptidase, middle and C-terminal domains
e2qmiE2 E:1-55,E:239-357 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2qmiE1 E:55-238 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2qmiE3 E:358-446 Lipocalins/Streptavidin D-aminopeptidase, middle and C-terminal domains D-aminopeptidase, middle and C-terminal domains
e2qmiF2 F:1-55,F:239-355 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2qmiF1 F:55-238 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2qmiF3 F:356-447 Lipocalins/Streptavidin D-aminopeptidase, middle and C-terminal domains D-aminopeptidase, middle and C-terminal domains
e2qmiG2 G:1-55,G:239-355 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2qmiG1 G:55-238 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2qmiG3 G:356-447 Lipocalins/Streptavidin D-aminopeptidase, middle and C-terminal domains D-aminopeptidase, middle and C-terminal domains
e2qmiH2 H:1-55,H:239-357 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2qmiH1 H:55-238 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2qmiH3 H:358-447 Lipocalins/Streptavidin D-aminopeptidase, middle and C-terminal domains D-aminopeptidase, middle and C-terminal domains

Structural contacts of domain e2qmiD3 of H-group "D-aminopeptidase, middle and C-terminal domains":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2qmiF3 D:X,Y,Z->F:x,y,z D-aminopeptidase, middle and C-terminal domains Interaction Interface Pymol
e2qmiF2 D:X,Y,Z->F:x,y,z a+b domain in beta-lactamase/transpeptidase-like proteins Interaction Interface Pymol
e2qmiF1 D:X,Y,Z->F:x,y,z alpha-helical domain in beta-lactamase/transpeptidase-like proteins Interaction Interface Pymol
e2qmiG3 D:X,Y,Z->G:x,y,z D-aminopeptidase, middle and C-terminal domains Interaction Interface Pymol
e2qmiG2 D:X,Y,Z->G:x,y,z a+b domain in beta-lactamase/transpeptidase-like proteins Interaction Interface Pymol
e2qmiG1 D:X,Y,Z->G:x,y,z alpha-helical domain in beta-lactamase/transpeptidase-like proteins Interaction Interface Pymol