ECOD: domain e2qqlA4

Domain ID e2qqlA4

A: beta sandwiches
X: jelly-roll
H: Spermadhesin, CUB domain
T: Spermadhesin, CUB domain
F: CUB

UID:	000331686
Type:	Automatic domain
Parent:	e1sfpA1
Range:	A:26-142
PDB:	2qql
PDB Description:	Neuropilin-2
UniProt:	O60462
Hsap BLAST neighbor:	O60462
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e2qqlA4

Domains in the same chain:

Download Pymol

e2qqlA4	A:26-142	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e2qqlA3	A:143-268	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e2qqlA2	A:269-432	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e2qqlA1	A:433-601	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like

Domains in the same PDB:

e2qqlA4	A:26-142	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e2qqlA3	A:143-268	jelly-roll	Spermadhesin, CUB domain	Spermadhesin, CUB domain
e2qqlA2	A:269-432	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e2qqlA1	A:433-601	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like
e2qqlH1	H:1-113	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2qqlH2	H:114-216	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2qqlL1	L:1-107	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2qqlL2	L:108-214	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e2qqlA4 of H-group "Spermadhesin, CUB domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2qqlA4	A:x,y,z->A:-X,-X+Y,-Z-1/3	Spermadhesin, CUB domain	Interaction Interface Pymol
e2qqlA4	A:-X,-X+Y,-Z-1/3->A:x,y,z	Spermadhesin, CUB domain	Interaction Interface Pymol
e2qqlH1	A:-X,-X+Y,-Z-1/3->H:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e2qqlH1	A:X,Y,Z->H:x,y,z	Immunoglobulin-related	Interaction Interface Pymol
e2qqlL1	A:X,Y,Z->L:x,y,z	Immunoglobulin-related	Interaction Interface Pymol