Domain ID e2rdjA1

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  • A: alpha arrays
  • X: HhH/H2TH
  • H: SAM/DNA-glycosylase
  • T: SAM domain-like
  • F: IMS_HHH
UID: 000048186
Type: Automatic domain
Parent: e1jx4A1
Range: A:177-239
Ligands: CA
PDB: 2rdj
PDB Description: DNA polymerase IV
UniProt: Q97W02
Species:

Structure of domain e2rdjA1

Domains in the same chain:

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e2rdjA3 A:1-20,A:76-176 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2rdjA4 A:21-75 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e2rdjA1 A:177-239 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2rdjA2 A:241-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e2rdjA3 A:1-20,A:76-176 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2rdjA4 A:21-75 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e2rdjA1 A:177-239 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2rdjA2 A:241-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e2rdjB3 B:1-20,B:76-176 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2rdjB4 B:21-75 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e2rdjB1 B:177-239 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2rdjB2 B:241-341 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e2rdjA1 of H-group "SAM/DNA-glycosylase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2rdjA2 A:x,y,z->A:X-1/2,-Y-1/2,-Z Lesion bypass DNA polymerase (Y-family), little finger domain Interaction Interface Pymol
e2rdjA4 A:x,y,z->A:-X,Y-1/2,-Z-1/2 Hypothetical protein Ta1206-like Interaction Interface Pymol