ECOD: domain e2rf4C5

Domain ID e2rf4C5

A: a+b two layers
X: Dodecin subunit-like
H: Flavin-binding protein dodecin-like
T: Flavin-binding protein dodecin-like
F: SHS2_Rpb7-N

UID:	001201972
Type:	Automatic domain
Parent:	e1go3E2
Range:	C:21-91,C:114-126
PDB:	2rf4
PDB Description:	DNA-directed RNA polymerase I subunit RPA4
UniProt:	P46669
Species:	Saccharomyces cerevisiae

Domain
In chain context
In PDB context

Structure of domain e2rf4C5

Domains in the same chain:

Download Pymol

e2rf4C5	C:21-91,C:114-126	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e2rf4C6	C:126-250	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins

Domains in the same PDB:

e2rf4A5	A:22-126	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e2rf4A6	A:126-250	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2rf4B1	B:16-101	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2rf4C5	C:21-91,C:114-126	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e2rf4C6	C:126-250	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2rf4D1	D:17-101	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e2rf4E5	E:21-126	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e2rf4E6	E:126-250	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e2rf4F1	F:17-101	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like

Structural contacts of domain e2rf4C5 of H-group "Flavin-binding protein dodecin-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2rf4D1	C:X,Y,Z->D:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e2rf4B1	C:X,Y,Z-1->B:x,y,z	SAM/DNA-glycosylase	Interaction Interface Pymol
e2rf4A5	C:X,Y,Z-1->A:x,y,z	Flavin-binding protein dodecin-like	Interaction Interface Pymol