Domain ID e2rkgA1

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: acid protease
  • F: RVP
UID: 000168534
Type: Automatic domain
Range: A:1-100
Ligands: AB1 GOL
PDB: 2rkg
PDB Description: PROTEASE RETROPEPSIN
UniProt: A0F6C5
Species: Human immunodeficiency virus 1

Structure of domain e2rkgA1

Structural contacts of domain e2rkgA1 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2rkgB1 A:X,Y,Z->B:x,y,z RIFT-related Interaction Interface Pymol
e2rkgB1 A:x,y,z->B:X-Y+1,X+1,Z+1/6 RIFT-related Interaction Interface Pymol
e2rkgA1 A:x,y,z->A:-Y+1,X-Y+1,Z+1/3 RIFT-related Interaction Interface Pymol
e2rkgA1 A:-Y+1,X-Y+1,Z+1/3->A:x,y,z RIFT-related Interaction Interface Pymol
e2rkgB1 A:-X,-Y+1,Z-1/2->B:x,y,z RIFT-related Interaction Interface Pymol
e2rkgA1 A:x,y,z->A:X-Y,X,Z+1/6 RIFT-related Interaction Interface Pymol
e2rkgA1 A:X-Y,X,Z+1/6->A:x,y,z RIFT-related Interaction Interface Pymol
e2rkgB1 A:x,y,z->B:X-Y,X,Z+1/6 RIFT-related Interaction Interface Pymol