| UID: | 001212704 |
|---|---|
| Type: | Automatic domain |
| Parent: | e7odcA2 |
| Range: | B:37-284 |
| Ligands: | PLP |
| PDB: | 2tod |
| PDB Description: | PROTEIN (ORNITHINE DECARBOXYLASE) |
| UniProt: | P07805 |
| Hsap BLAST neighbor: | P11926 |
| Species: | Trypanosoma brucei |
Structure of domain e2todB3
Domains in the same chain:
| e2todB3 | B:37-284 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e2todB4 | B:280-410 | cradle loop barrel | RIFT-related | Alanine racemase-C |
Domains in the same PDB:
| e2todA3 | A:37-284 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e2todA4 | A:280-410 | cradle loop barrel | RIFT-related | Alanine racemase-C |
| e2todB3 | B:37-284 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e2todB4 | B:280-410 | cradle loop barrel | RIFT-related | Alanine racemase-C |
| e2todC3 | C:37-284 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e2todC4 | C:280-410 | cradle loop barrel | RIFT-related | Alanine racemase-C |
| e2todD3 | D:37-284 | TIM beta/alpha-barrel | TIM barrels | TIM barrels |
| e2todD4 | D:280-410 | cradle loop barrel | RIFT-related | Alanine racemase-C |
Structural contacts of domain e2todB3 of H-group "TIM barrels":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e2todA3 | B:x,y,z->A:X,Y,Z | TIM barrels | Interaction Interface Pymol |
| e2todA4 | B:x,y,z->A:X,Y,Z | RIFT-related | Interaction Interface Pymol |
| e2todD3 | B:x,y,z->D:-X,Y-1/2,-Z | TIM barrels | Interaction Interface Pymol |
| e2todD4 | B:x,y,z->D:-X,Y-1/2,-Z | RIFT-related | Interaction Interface Pymol |
| e2todA3 | B:x,y,z->A:-X,Y-1/2,-Z | TIM barrels | Interaction Interface Pymol |
| e2todA3 | B:x,y,z->A:-X+1,Y-1/2,-Z | TIM barrels | Interaction Interface Pymol |
| e2todC4 | B:x,y,z->C:-X+1,Y-1/2,-Z | RIFT-related | Interaction Interface Pymol |
| e2todA4 | B:x,y,z->A:X-1,Y,Z | RIFT-related | Interaction Interface Pymol |
