ECOD: domain e2v5dA4

Domain ID e2v5dA4

A: beta sandwiches
X: jelly-roll
H: Galactose-binding domain-like
T: Galactose-binding domain-like
F: F5_F8_type_C

UID:	000170049
Type:	Automatic domain
Parent:	e1sddB1
Range:	A:626-767
Ligands:	CA
PDB:	2v5d
PDB Description:	O-GLCNACASE NAGJ
UniProt:	Q0TR53
Species:	Clostridium perfringens

Domain
In chain context
In PDB context

Structure of domain e2v5dA4

Domains in the same chain:

Download Pymol

e2v5dA2	A:41-178	Zincin-like	beta-N-acetylhexosaminidase-like domain	beta-N-acetylhexosaminidase-like domain
e2v5dA1	A:179-495	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e2v5dA3	A:496-625	Hyaluronidase domain-like	Hyaluronidase post-catalytic domain-like	Hyaluronidase post-catalytic domain-like
e2v5dA4	A:626-767	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like

Domains in the same PDB:

e2v5dA2	A:41-178	Zincin-like	beta-N-acetylhexosaminidase-like domain	beta-N-acetylhexosaminidase-like domain
e2v5dA1	A:179-495	TIM beta/alpha-barrel	TIM barrels	TIM barrels
e2v5dA3	A:496-625	Hyaluronidase domain-like	Hyaluronidase post-catalytic domain-like	Hyaluronidase post-catalytic domain-like
e2v5dA4	A:626-767	jelly-roll	Galactose-binding domain-like	Galactose-binding domain-like

Structural contacts of domain e2v5dA4 of H-group "Galactose-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2v5dA4	A:x,y,z->A:-X,Y-1/2,-Z+1	Galactose-binding domain-like	Interaction Interface Pymol
e2v5dA4	A:-X,Y-1/2,-Z+1->A:x,y,z	Galactose-binding domain-like	Interaction Interface Pymol
e2v5dA1	A:-X,Y-1/2,-Z+1->A:x,y,z	TIM barrels	Interaction Interface Pymol
e2v5dA1	A:-X+1,Y-1/2,-Z+1->A:x,y,z	TIM barrels	Interaction Interface Pymol