Domain ID e2va8A2

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: DEAD
UID: 000197593
Type: Automatic domain
Parent: e2p6rA4
Range: A:-1-198
Ligands: SO4
PDB: 2va8
PDB Description: SKI2-TYPE HELICASE
Hsap BLAST neighbor: O75643
Species: Sulfolobus solfataricus

Structure of domain e2va8A2

Domains in the same chain:

Download Pymol

e2va8A2 A:-1-198 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2va8A1 A:199-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2va8A5 A:418-502 HTH HTH winged
e2va8A3 A:503-646 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e2va8A4 A:647-705 HhH/H2TH SAM-like subdomain in Sec63-like proteins SAM-like subdomain in Sec63-like proteins

Domains in the same PDB:

e2va8A2 A:-1-198 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2va8A1 A:199-417 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2va8A5 A:418-502 HTH HTH winged
e2va8A3 A:503-646 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e2va8A4 A:647-705 HhH/H2TH SAM-like subdomain in Sec63-like proteins SAM-like subdomain in Sec63-like proteins
e2va8B6 B:-2-199 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2va8B7 B:200-416 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2va8B9 B:417-500 HTH HTH winged
e2va8B8 B:501-646 Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like Sec63 N-terminal subdomain-like
e2va8B5 B:647-705 HhH/H2TH SAM-like subdomain in Sec63-like proteins SAM-like subdomain in Sec63-like proteins

Structural contacts of domain e2va8A2 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2va8B6 A:X-1,Y,Z-1->B:x,y,z P-loop domains-related Interaction Interface Pymol
e2va8A4 A:x,y,z->A:-X,Y-1/2,-Z+1 SAM-like subdomain in Sec63-like proteins Interaction Interface Pymol