ECOD: domain e2vbkA2

Domain ID e2vbkA2

A: beta duplicates or obligate multimers
X: Single-stranded right-handed beta-helix
H: Pectin lyase-like
T: Pectin lyase-like
F: Unmapped domains

UID:	000339124
Type:	Automatic domain
Parent:	e4oj6C2
Range:	A:112-549
Ligands:	CO2 EDO GOL MG PGR PO4
PDB:	2vbk
PDB Description:	TAILSPIKE-PROTEIN
UniProt:	Q9XJP3
Species:	Shigella phage Sf6

Domains in the same chain:

Download Pymol

e2vbkA2	A:112-549	Single-stranded right-handed beta-helix	Pectin lyase-like	Pectin lyase-like
e2vbkA1	A:550-622	Immunoglobulin-like beta-sandwich	Ig-like domain in tailspike protein	Ig-like domain in tailspike protein

Domains in the same PDB:

e2vbkA2	A:112-549	Single-stranded right-handed beta-helix	Pectin lyase-like	Pectin lyase-like
e2vbkA1	A:550-622	Immunoglobulin-like beta-sandwich	Ig-like domain in tailspike protein	Ig-like domain in tailspike protein

Structural contacts of domain e2vbkA2 of H-group "Pectin lyase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2vbkA2	A:x,y,z->A:-Y+1,X-Y+1,Z	Pectin lyase-like	Interaction Interface Pymol
e2vbkA2	A:-Y+1,X-Y+1,Z->A:x,y,z	Pectin lyase-like	Interaction Interface Pymol
e2vbkA1	A:-Y+1,X-Y+1,Z->A:x,y,z	Ig-like domain in tailspike protein	Interaction Interface Pymol
e2vbkA1	A:x,y,z->A:X-1/3,Y-2/3,Z+1/3	Ig-like domain in tailspike protein	Interaction Interface Pymol
e2vbkA2	A:x,y,z->A:-Y+2/3,X-Y+1/3,Z+1/3	Pectin lyase-like	Interaction Interface Pymol
e2vbkA2	A:-Y+2/3,X-Y+1/3,Z+1/3->A:x,y,z	Pectin lyase-like	Interaction Interface Pymol