Domain ID e2vd6D1

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  • A: alpha arrays
  • X: L-aspartase middle domain-like
  • H: L-aspartase middle domain-like
  • T: L-aspartase middle domain-like
  • F: Lyase_1
UID: 000330136
Type: Automatic domain
Parent: e1c3cA1
Range: D:109-351
Ligands: 2SA AMP CL FUM GOL
PDB: 2vd6
PDB Description: ADENYLOSUCCINATE LYASE
UniProt: P30566
Hsap BLAST neighbor: P30566
Species: Homo sapiens

Structure of domain e2vd6D1

Domains in the same chain:

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e2vd6D3 D:5-110 L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like
e2vd6D1 D:109-351 L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like
e2vd6D2 D:352-476 L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like

Domains in the same PDB:

e2vd6A3 A:5-110 L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like
e2vd6A1 A:109-351 L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like
e2vd6A2 A:352-474 L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like
e2vd6B3 B:5-110 L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like
e2vd6B1 B:109-351 L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like
e2vd6B2 B:352-476 L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like
e2vd6C1 C:5-107 L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like
e2vd6C2 C:108-363 L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like
e2vd6C3 C:364-472 L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like
e2vd6D3 D:5-110 L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like L-aspartase N-terminal domain-like
e2vd6D1 D:109-351 L-aspartase middle domain-like L-aspartase middle domain-like L-aspartase middle domain-like
e2vd6D2 D:352-476 L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like L-aspartase C-terminal domain-like

Structural contacts of domain e2vd6D1 of H-group "L-aspartase middle domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vd6C3 D:x,y,z->C:X,Y,Z L-aspartase C-terminal domain-like Interaction Interface Pymol
e2vd6C2 D:x,y,z->C:X,Y,Z L-aspartase middle domain-like Interaction Interface Pymol
e2vd6A1 D:x,y,z->A:X,Y,Z L-aspartase middle domain-like Interaction Interface Pymol
e2vd6A3 D:x,y,z->A:X,Y,Z L-aspartase N-terminal domain-like Interaction Interface Pymol
e2vd6B2 D:x,y,z->B:X,Y,Z L-aspartase C-terminal domain-like Interaction Interface Pymol
e2vd6B1 D:x,y,z->B:X,Y,Z L-aspartase middle domain-like Interaction Interface Pymol
e2vd6D3 D:-X,Y-1/2,-Z+1/2->D:x,y,z L-aspartase N-terminal domain-like Interaction Interface Pymol