Domain ID e2vdcJ5

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  • A: alpha arrays
  • X: alpha-helical ferredoxin-like
  • H: alpha-helical ferredoxin
  • T: alpha-helical ferredoxin
  • F: Fer4_20
UID: 001210866
Type: Automatic domain
Parent: e1gteA1
Range: J:26-140
Ligands: F3S FAD SF4
PDB: 2vdc
PDB Description: GLUTAMATE SYNTHASE [NADPH] SMALL CHAIN
UniProt: Q05756
Hsap BLAST neighbor: Q12882
Species: Azospirillum brasilense

Structure of domain e2vdcJ5

Domains in the same chain:

Download Pymol

e2vdcJ5 J:26-140 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e2vdcJ6 J:141-288 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2vdcJ7 J:289-481 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain

Domains in the same PDB:

e2vdcA3 A:1-65,A:174-422 Ntn/PP2C Ntn Class II glutamine amidotransferases
e2vdcA1 A:66-173 Alpha-beta plaits Alpha subunit of glutamate synthase, insertion domain Alpha subunit of glutamate synthase, insertion domain
e2vdcA5 A:423-791 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdcA4 A:792-1202 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdcA2 A:1203-1470 Single-stranded right-handed beta-helix Alpha subunit of glutamate synthase-C Alpha subunit of glutamate synthase-C
e2vdcB3 B:1-65,B:174-422 Ntn/PP2C Ntn Class II glutamine amidotransferases
e2vdcB1 B:66-173 Alpha-beta plaits Alpha subunit of glutamate synthase, insertion domain Alpha subunit of glutamate synthase, insertion domain
e2vdcB5 B:423-789 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdcB4 B:790-1202 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdcB2 B:1203-1470 Single-stranded right-handed beta-helix Alpha subunit of glutamate synthase-C Alpha subunit of glutamate synthase-C
e2vdcC3 C:1-65,C:174-422 Ntn/PP2C Ntn Class II glutamine amidotransferases
e2vdcC1 C:66-173 Alpha-beta plaits Alpha subunit of glutamate synthase, insertion domain Alpha subunit of glutamate synthase, insertion domain
e2vdcC5 C:423-791 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdcC4 C:792-1202 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdcC2 C:1203-1470 Single-stranded right-handed beta-helix Alpha subunit of glutamate synthase-C Alpha subunit of glutamate synthase-C
e2vdcD3 D:1-65,D:174-422 Ntn/PP2C Ntn Class II glutamine amidotransferases
e2vdcD1 D:66-173 Alpha-beta plaits Alpha subunit of glutamate synthase, insertion domain Alpha subunit of glutamate synthase, insertion domain
e2vdcD5 D:423-789 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdcD4 D:790-1202 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdcD2 D:1203-1470 Single-stranded right-handed beta-helix Alpha subunit of glutamate synthase-C Alpha subunit of glutamate synthase-C
e2vdcE3 E:1-65,E:174-422 Ntn/PP2C Ntn Class II glutamine amidotransferases
e2vdcE1 E:66-173 Alpha-beta plaits Alpha subunit of glutamate synthase, insertion domain Alpha subunit of glutamate synthase, insertion domain
e2vdcE5 E:423-791 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdcE4 E:792-1202 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdcE2 E:1203-1470 Single-stranded right-handed beta-helix Alpha subunit of glutamate synthase-C Alpha subunit of glutamate synthase-C
e2vdcF3 F:1-65,F:174-422 Ntn/PP2C Ntn Class II glutamine amidotransferases
e2vdcF1 F:66-173 Alpha-beta plaits Alpha subunit of glutamate synthase, insertion domain Alpha subunit of glutamate synthase, insertion domain
e2vdcF5 F:423-789 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdcF4 F:790-1202 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vdcF2 F:1203-1470 Single-stranded right-handed beta-helix Alpha subunit of glutamate synthase-C Alpha subunit of glutamate synthase-C
e2vdcG1 G:26-140 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e2vdcG2 G:141-288 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2vdcG3 G:289-481 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2vdcH5 H:26-140 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e2vdcH6 H:141-288 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2vdcH7 H:289-481 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2vdcI5 I:26-140 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e2vdcI6 I:141-288 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2vdcI7 I:289-481 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2vdcJ5 J:26-140 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e2vdcJ6 J:141-288 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2vdcJ7 J:289-481 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2vdcK5 K:26-140 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e2vdcK6 K:141-288 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2vdcK7 K:289-481 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2vdcL5 L:26-140 alpha-helical ferredoxin-like alpha-helical ferredoxin alpha-helical ferredoxin
e2vdcL6 L:141-288 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain
e2vdcL7 L:289-481 Rossmann-like Rossmann-related FAD/NAD(P)-binding domain

Structural contacts of domain e2vdcJ5 of H-group "alpha-helical ferredoxin":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vdcA5 J:X,Y,Z->A:x,y,z TIM barrels Interaction Interface Pymol
e2vdcA4 J:X,Y,Z->A:x,y,z TIM barrels Interaction Interface Pymol