ECOD: domain e2vdnB1

Domain ID e2vdnB1

A: few secondary structure elements
X: Trefoil/Plexin domain-like
H: Trefoil/Plexin domain-like
T: Trefoil/Plexin domain-like
F: PSI_integrin

UID:	001580135
Type:	Automatic domain
Parent:	e1tyeB2
Range:	B:1-57
PDB:	2vdn
PDB Description:	INTEGRIN BETA-3
UniProt:	P05106
Hsap BLAST neighbor:	P05106
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e2vdnB1

Domains in the same chain:

Download Pymol

e2vdnB1	B:1-57	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like
e2vdnB3	B:58-106,B:355-440	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdnB2	B:107-354	HAD domain-like	HAD domain-related	vWA-like

Domains in the same PDB:

e2vdnA1	A:1-452	beta-propeller-like	beta-propeller	7-bladed
e2vdnB1	B:1-57	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like	Trefoil/Plexin domain-like
e2vdnB3	B:58-106,B:355-440	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdnB2	B:107-354	HAD domain-like	HAD domain-related	vWA-like
e2vdnH2	H:1-119	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdnH1	H:121-221	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdnL1	L:1-107	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vdnL2	L:108-214	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e2vdnB1 of H-group "Trefoil/Plexin domain-like":

Sorry, the images are being generated.

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2vdnA1	B:x,y,z->A:X-Y,-Y,-Z+4/3	beta-propeller	Interaction Interface Pymol