Domain ID e2vf7B2

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: ABC_tran
UID: 001565411
Type: Manual and representative domain
Range: B:492-625,B:680-842
Ligands: ADP
PDB: 2vf7
PDB Description: EXCINUCLEASE ABC, SUBUNIT A.
UniProt: Q9RYW8
Hsap BLAST neighbor: Q09428
Species: Deinococcus radiodurans

Structure of domain e2vf7B2

Domains in the same chain:

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e2vf7B1 B:8-131,B:302-491 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2vf7B3 B:132-163,B:283-301 DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain
e2vf7B5 B:164-282 DNA-binding domain in UvrA DNA-binding domain in UvrA DNA-binding domain in UvrA
e2vf7B2 B:492-625,B:680-842 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2vf7B4 B:626-679 DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain

Domains in the same PDB:

e2vf7A3 A:11-131,A:302-491 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2vf7A4 A:132-163,A:283-301 DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain
e2vf7A5 A:164-282 DNA-binding domain in UvrA DNA-binding domain in UvrA DNA-binding domain in UvrA
e2vf7A2 A:492-625,A:680-842 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2vf7A1 A:626-679 DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain
e2vf7B1 B:8-131,B:302-491 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2vf7B3 B:132-163,B:283-301 DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain
e2vf7B5 B:164-282 DNA-binding domain in UvrA DNA-binding domain in UvrA DNA-binding domain in UvrA
e2vf7B2 B:492-625,B:680-842 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2vf7B4 B:626-679 DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain
e2vf7C5 C:10-131,C:302-491 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2vf7C1 C:132-163,C:283-301 DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain
e2vf7C2 C:164-282 DNA-binding domain in UvrA DNA-binding domain in UvrA DNA-binding domain in UvrA
e2vf7C3 C:492-552,C:572-625,C:680-842 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2vf7C4 C:626-679 DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain DnaJ/Hsp40 cysteine-rich domain

Structural contacts of domain e2vf7B2 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vf7A2 B:x,y,z->A:X,Y,Z-1 P-loop domains-related Interaction Interface Pymol
e2vf7C5 B:-X+1,Y,-Z+2->C:x,y,z P-loop domains-related Interaction Interface Pymol
e2vf7C5 B:x,y,z->C:X,Y,Z-1 P-loop domains-related Interaction Interface Pymol
e2vf7C1 B:X,Y-1,Z+1->C:x,y,z DnaJ/Hsp40 cysteine-rich domain Interaction Interface Pymol