Domain ID e2vg5A9

Download files:
  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: RNaseH-like domain in reverse transcriptase
  • T: RNaseH-like domain in reverse transcriptase
  • F: RVT_connect
UID: 001186908
Type: Automatic domain
Parent: e2zd1B3
Range: A:317-428
Ligands: NNC
PDB: 2vg5
PDB Description: REVERSE TRANSCRIPTASE/RIBONUCLEASE H
UniProt: P03366
Species: Human immunodeficiency virus 1

Structure of domain e2vg5A9

Domains in the same chain:

Download Pymol

e2vg5A12 A:1-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2vg5A11 A:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2vg5A9 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e2vg5A10 A:429-557 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e2vg5A12 A:1-239 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2vg5A11 A:240-316 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2vg5A9 A:317-428 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase
e2vg5A10 A:429-557 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vg5B2 B:1005-1241 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2vg5B1 B:1242-1315 helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases helical bundle domain in reverse transcriptase-like polymerases
e2vg5B3 B:1316-1427 Ribonuclease H-like RNaseH-like domain in reverse transcriptase RNaseH-like domain in reverse transcriptase

Structural contacts of domain e2vg5A9 of H-group "RNaseH-like domain in reverse transcriptase":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vg5B3 A:X,Y,Z->B:x,y,z RNaseH-like domain in reverse transcriptase Interaction Interface Pymol
e2vg5B2 A:X,Y,Z->B:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2vg5A11 A:x,y,z->A:-X,Y,-Z+1/2 helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e2vg5A11 A:-X,Y,-Z+1/2->A:x,y,z helical bundle domain in reverse transcriptase-like polymerases Interaction Interface Pymol
e2vg5B2 A:x,y,z->B:X-1/2,-Y+1/2,-Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol