Domain ID e2vk4D1

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: DHS-like NAD/FAD-binding domain
  • F: TPP_enzyme_M
UID: 000356844
Type: Automatic domain
Parent: e2ez9A1
Range: D:181-359
PDB: 2vk4
PDB Description: PYRUVATE DECARBOXYLASE
UniProt: Q12629
Species: Kluyveromyces lactis

Structure of domain e2vk4D1

Domains in the same chain:

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e2vk4D2 D:2-180 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk4D1 D:181-359 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2vk4D3 D:360-563 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Domains in the same PDB:

e2vk4A2 A:2-180 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk4A1 A:181-359 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2vk4A3 A:360-563 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk4B2 B:2-180 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk4B1 B:181-359 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2vk4B3 B:360-561 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk4C2 C:2-180 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk4C1 C:181-359 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2vk4C3 C:360-560 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk4D2 D:2-180 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2vk4D1 D:181-359 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2vk4D3 D:360-563 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Structural contacts of domain e2vk4D1 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vk4C2 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2vk4A3 D:x,y,z->A:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2vk4A1 D:x,y,z->A:X,Y,Z Rossmann-related Interaction Interface Pymol
e2vk4C2 D:X-1,Y,Z->C:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2vk4C1 D:X-1,Y,Z->C:x,y,z Rossmann-related Interaction Interface Pymol
e2vk4B1 D:X-1,Y,Z-1->B:x,y,z Rossmann-related Interaction Interface Pymol
e2vk4A2 D:X-1,Y,Z->A:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol