ECOD: domain e2vkmD3

Domain ID e2vkmD3

A: beta barrels
X: cradle loop barrel
H: RIFT-related
T: acid protease
F: Asp

UID:	001249799
Type:	Automatic domain
Parent:	e1wkrA2
Range:	D:45P-183
Ligands:	BSD
PDB:	2vkm
PDB Description:	BETA-SECRETASE 1
UniProt:	P56817
Hsap BLAST neighbor:	P56817
Species:	Homo sapiens

Domain
In chain context
In PDB context

Structure of domain e2vkmD3

Domains in the same chain:

Download Pymol

e2vkmD3	D:45P-183	cradle loop barrel	RIFT-related	acid protease
e2vkmD2	D:184-385	cradle loop barrel	RIFT-related	acid protease

Domains in the same PDB:

e2vkmA3	A:45P-183	cradle loop barrel	RIFT-related	acid protease
e2vkmA2	A:184-385	cradle loop barrel	RIFT-related	acid protease
e2vkmB3	B:45P-183	cradle loop barrel	RIFT-related	acid protease
e2vkmB2	B:184-385	cradle loop barrel	RIFT-related	acid protease
e2vkmC3	C:45P-183	cradle loop barrel	RIFT-related	acid protease
e2vkmC2	C:184-385	cradle loop barrel	RIFT-related	acid protease
e2vkmD3	D:45P-183	cradle loop barrel	RIFT-related	acid protease
e2vkmD2	D:184-385	cradle loop barrel	RIFT-related	acid protease

Structural contacts of domain e2vkmD3 of H-group "RIFT-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2vkmA3	D:-X,Y-1/2,-Z+1->A:x,y,z	RIFT-related	Interaction Interface Pymol
e2vkmA2	D:-X+1,Y-1/2,-Z+1->A:x,y,z	RIFT-related	Interaction Interface Pymol
e2vkmA3	D:-X+1,Y-1/2,-Z+1->A:x,y,z	RIFT-related	Interaction Interface Pymol
e2vkmB2	D:-X+1,Y-1/2,-Z+1->B:x,y,z	RIFT-related	Interaction Interface Pymol
e2vkmB3	D:-X+1,Y-1/2,-Z+1->B:x,y,z	RIFT-related	Interaction Interface Pymol
e2vkmC2	D:x,y,z->C:X,Y,Z	RIFT-related	Interaction Interface Pymol
e2vkmD2	D:-X+1,Y-1/2,-Z+1->D:x,y,z	RIFT-related	Interaction Interface Pymol