Domain ID e2vl4B5

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  • A: a/b barrels
  • X: TIM beta/alpha-barrel
  • H: TIM barrels
  • T: TIM barrels
  • F: Unmapped domains
UID: 000094924
Type: Automatic domain
Parent: e1qnrA1
Range: B:331-678
Ligands: BR CL EDO MNM
PDB: 2vl4
PDB Description: BETA-MANNOSIDASE
UniProt: Q8AAK6
Hsap BLAST neighbor: O00462
Species:

Structure of domain e2vl4B5

Domains in the same chain:

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e2vl4B1 B:28-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e2vl4B2 B:220-330 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vl4B5 B:331-678 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vl4B4 B:679-783 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vl4B3 B:784-864 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Domains in the same PDB:

e2vl4A1 A:28-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e2vl4A2 A:220-330 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vl4A5 A:331-678 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vl4A4 A:679-783 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vl4A3 A:784-864 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vl4B1 B:28-219 jelly-roll Galactose-binding domain-like Galactose-binding domain-like
e2vl4B2 B:220-330 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vl4B5 B:331-678 TIM beta/alpha-barrel TIM barrels TIM barrels
e2vl4B4 B:679-783 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like
e2vl4B3 B:784-864 Immunoglobulin-like beta-sandwich Immunoglobulin-related Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e2vl4B5 of H-group "TIM barrels":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vl4A1 B:x,y,z->A:X-1,Y,Z Galactose-binding domain-like Interaction Interface Pymol
e2vl4A5 B:X,Y,Z-1->A:x,y,z TIM barrels Interaction Interface Pymol
e2vl4A4 B:X,Y,Z-1->A:x,y,z Immunoglobulin-related Interaction Interface Pymol
e2vl4B5 B:x,y,z->B:-X,Y-1/2,-Z+1 TIM barrels Interaction Interface Pymol
e2vl4B2 B:-X,Y-1/2,-Z+1->B:x,y,z Immunoglobulin-related Interaction Interface Pymol
e2vl4B5 B:-X,Y-1/2,-Z+1->B:x,y,z TIM barrels Interaction Interface Pymol