Domain ID e2vmkA2

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  • A: a+b three layers
  • X: Thioredoxin-like domain in RNase E
  • H: Thioredoxin-like domain in RNase E
  • T: Thioredoxin-like domain in RNase E
  • F: RNase_E_G_Thio
UID: 000345661
Type: Automatic domain
Parent: e2bx2L5
Range: A:402-508
Ligands: ZN
PDB: 2vmk
PDB Description: RIBONUCLEASE E
UniProt: P21513
Species: Escherichia coli

Structure of domain e2vmkA2

Domains in the same chain:

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e2vmkA5 A:1-31,A:211-278 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vmkA4 A:35-118 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2vmkA3 A:119-210 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vmkA1 A:279-401 Carbon-nitrogen hydrolase-like DNase I-like DNase I-like
e2vmkA2 A:402-508 Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E

Domains in the same PDB:

e2vmkA5 A:1-31,A:211-278 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vmkA4 A:35-118 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2vmkA3 A:119-210 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vmkA1 A:279-401 Carbon-nitrogen hydrolase-like DNase I-like DNase I-like
e2vmkA2 A:402-508 Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E
e2vmkB18 B:1-34,B:198-265 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vmkB20 B:35-111 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2vmkB17 B:112-197 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vmkB16 B:266-384 Carbon-nitrogen hydrolase-like DNase I-like DNase I-like
e2vmkB19 B:385-513 Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E
e2vmkC5 C:1-33,C:211-278 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vmkC4 C:37-118 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2vmkC3 C:119-210 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vmkC2 C:279-393 Carbon-nitrogen hydrolase-like DNase I-like DNase I-like
e2vmkC1 C:401-506 Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E
e2vmkD3 D:1-34,D:198-265 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vmkD5 D:35-111 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2vmkD2 D:112-197 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vmkD1 D:266-384 Carbon-nitrogen hydrolase-like DNase I-like DNase I-like
e2vmkD4 D:385-515 Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E

Structural contacts of domain e2vmkA2 of H-group "Thioredoxin-like domain in RNase E":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vmkB16 A:X,Y,Z->B:x,y,z DNase I-like Interaction Interface Pymol
e2vmkB19 A:X,Y,Z->B:x,y,z Thioredoxin-like domain in RNase E Interaction Interface Pymol
e2vmkB18 A:X,Y,Z->B:x,y,z Ribonuclease H-like Interaction Interface Pymol
e2vmkD4 A:X,Y,Z->D:x,y,z Thioredoxin-like domain in RNase E Interaction Interface Pymol
e2vmkB20 A:X-1,Y,Z->B:x,y,z Nucleic acid-binding proteins Interaction Interface Pymol
e2vmkA5 A:x,y,z->A:X,Y-1,Z Ribonuclease H-like Interaction Interface Pymol
e2vmkC1 A:X,Y,Z->C:x,y,z Thioredoxin-like domain in RNase E Interaction Interface Pymol