Domain ID e2vrtB2

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  • A: a+b four layers
  • X: Carbon-nitrogen hydrolase-like
  • H: DNase I-like
  • T: DNase I-like
  • F: RNase_E_G
UID: 000345683
Type: Automatic domain
Parent: e2bx2L3
Range: B:279-395
PDB: 2vrt
PDB Description: RIBONUCLEASE E
UniProt: P21513
Species: Escherichia coli

Structure of domain e2vrtB2

Domains in the same chain:

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e2vrtB4 B:1-29,B:208-278 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vrtB3 B:119-209 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vrtB2 B:279-395 Carbon-nitrogen hydrolase-like DNase I-like DNase I-like
e2vrtB1 B:401-508 Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E

Domains in the same PDB:

e2vrtA5 A:1-32,A:211-278 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vrtA4 A:35-118 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2vrtA2 A:119-210 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vrtA1 A:279-393 Carbon-nitrogen hydrolase-like DNase I-like DNase I-like
e2vrtA3 A:402-505 Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E
e2vrtB4 B:1-29,B:208-278 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vrtB3 B:119-209 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vrtB2 B:279-395 Carbon-nitrogen hydrolase-like DNase I-like DNase I-like
e2vrtB1 B:401-508 Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E
e2vrtC4 C:1-32,C:208-278 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vrtC3 C:119-209 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vrtC2 C:279-401 Carbon-nitrogen hydrolase-like DNase I-like DNase I-like
e2vrtC1 C:402-509 Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E
e2vrtD5 D:1-32,D:211-278 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e2vrtD4 D:35-118 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2vrtD3 D:119-210 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2vrtD2 D:279-399 Carbon-nitrogen hydrolase-like DNase I-like DNase I-like
e2vrtD1 D:400-508 Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E Thioredoxin-like domain in RNase E

Structural contacts of domain e2vrtB2 of H-group "DNase I-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vrtA3 B:x,y,z->A:X,Y,Z Thioredoxin-like domain in RNase E Interaction Interface Pymol
e2vrtA1 B:x,y,z->A:X,Y,Z DNase I-like Interaction Interface Pymol
e2vrtA2 B:x,y,z->A:-X,Y,-Z+1 Ribosomal protein S5 domain 2-like Interaction Interface Pymol