Domain ID e2vtbD4

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  • A: a/b three-layered sandwiches
  • X: HUP domain-like
  • H: HUP domains
  • T: HUP domains
  • F: DNA_photolyase
UID: 001260870
Type: Automatic domain
Parent: e1dnpA2
Range: D:2-221
Ligands: CL MHF
PDB: 2vtb
PDB Description: CRYPTOCHROME DASH
UniProt: Q84KJ5
Hsap BLAST neighbor: Q16526
Species: Arabidopsis thaliana

Structure of domain e2vtbD4

Domains in the same chain:

e2vtbD4 D:2-221 HUP domain-like HUP domains HUP domains
e2vtbD3 D:222-496 Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain

Domains in the same PDB:

e2vtbA6 A:0-221 HUP domain-like HUP domains HUP domains
e2vtbA5 A:222-499 Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain
e2vtbB4 B:2-221 HUP domain-like HUP domains HUP domains
e2vtbB3 B:222-496 Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain
e2vtbC4 C:3-221 HUP domain-like HUP domains HUP domains
e2vtbC3 C:222-497 Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain
e2vtbD4 D:2-221 HUP domain-like HUP domains HUP domains
e2vtbD3 D:222-496 Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain
e2vtbE4 E:2-221 HUP domain-like HUP domains HUP domains
e2vtbE3 E:222-497 Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain
e2vtbF4 F:3-221 HUP domain-like HUP domains HUP domains
e2vtbF3 F:222-496 Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain-related Cryptochrome/photolyase FAD-binding domain

Structural contacts of domain e2vtbD4 of H-group "HUP domains":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2vtbC4 D:x,y,z->C:X,Y,Z HUP domains Interaction Interface Pymol
e2vtbC3 D:x,y,z->C:X,Y,Z Cryptochrome/photolyase FAD-binding domain-related Interaction Interface Pymol
e2vtbC4 D:x,y,z->C:X-1/2,-Y+1/2,-Z-1 HUP domains Interaction Interface Pymol
e2vtbC3 D:x,y,z->C:X-1/2,-Y+1/2,-Z-1 Cryptochrome/photolyase FAD-binding domain-related Interaction Interface Pymol
e2vtbA5 D:x,y,z->A:X-1/2,-Y+1/2,-Z-1 Cryptochrome/photolyase FAD-binding domain-related Interaction Interface Pymol
e2vtbB3 D:x,y,z->B:-X-1/2,-Y+1,Z-1/2 Cryptochrome/photolyase FAD-binding domain-related Interaction Interface Pymol