| UID: | 000066025 |
|---|---|
| Type: | Automatic domain |
| Parent: | e1tgoA4 |
| Range: | A:348-446,A:501-609 |
| Ligands: | SO4 |
| PDB: | 2vwk |
| PDB Description: | DNA POLYMERASE |
| UniProt: | P56689 |
| Hsap BLAST neighbor: | P28340 |
| Species: | Thermococcus gorgonarius |
Structure of domain e2vwkA4
Domains in the same chain:
Domains in the same PDB:
Structural contacts of domain e2vwkA4 of H-group "Adenylyl and guanylyl cyclase catalytic domain-like":
The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.
| Domain ID | Symmetry operator | H-group | Visualization |
|---|---|---|---|
| e2vwkA2 | A:x,y,z->A:X-1/2,-Y+1/2,-Z | "fingers" domain in bacteriophage RB69-like DNA polymerase I | Interaction Interface Pymol |
| e2vwkA3 | A:x,y,z->A:X-1/2,-Y+1/2,-Z | "thumb" domain in bacteriophage RB69-like DNA polymerase I | Interaction Interface Pymol |
| e2vwkA4 | A:x,y,z->A:X-1/2,-Y+1/2,-Z | Adenylyl and guanylyl cyclase catalytic domain-like | Interaction Interface Pymol |
| e2vwkA3 | A:X-1/2,-Y+1/2,-Z->A:x,y,z | "thumb" domain in bacteriophage RB69-like DNA polymerase I | Interaction Interface Pymol |
| e2vwkA4 | A:X-1/2,-Y+1/2,-Z->A:x,y,z | Adenylyl and guanylyl cyclase catalytic domain-like | Interaction Interface Pymol |
| e2vwkA1 | A:-X,Y-1/2,-Z+1/2->A:x,y,z | Nucleic acid-binding proteins | Interaction Interface Pymol |
| e2vwkA6 | A:-X,Y-1/2,-Z+1/2->A:x,y,z | Ribonuclease H-like | Interaction Interface Pymol |
| e2vwkA5 | A:-X,Y-1/2,-Z+1/2->A:x,y,z | Family B DNA polymerase insertion domain | Interaction Interface Pymol |
