Domain ID e2wadB6

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  • A: beta complex topology
  • X: Penicillin binding protein dimerisation domain
  • H: Penicillin binding protein dimerisation domain
  • T: Penicillin binding protein dimerisation domain
  • F: PBP_dimer
UID: 001156469
Type: Automatic domain
Parent: e1rp5A6
Range: B:52-76,B:207-297
Ligands: ZN
PDB: 2wad
PDB Description: PENICILLIN-BINDING PROTEIN 2B
UniProt: B0B6I9
Species: Streptococcus pneumoniae

Structure of domain e2wadB6

Domains in the same chain:

e2wadB6 B:52-76,B:207-297 Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain
e2wadB4 B:77-206 ClpS-like Penicillin binding protein ClpS-like domain Penicillin binding protein ClpS-like domain
e2wadB5 B:298-368,B:509-680 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2wadB7 B:369-508 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins

Domains in the same PDB:

e2wadA6 A:50-76,A:207-297 Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain
e2wadA4 A:77-206 ClpS-like Penicillin binding protein ClpS-like domain Penicillin binding protein ClpS-like domain
e2wadA5 A:298-368,A:509-680 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2wadA7 A:369-508 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2wadB6 B:52-76,B:207-297 Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain
e2wadB4 B:77-206 ClpS-like Penicillin binding protein ClpS-like domain Penicillin binding protein ClpS-like domain
e2wadB5 B:298-368,B:509-680 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2wadB7 B:369-508 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins
e2wadC1 C:50-76,C:219-309 Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain Penicillin binding protein dimerisation domain
e2wadC3 C:77-218 ClpS-like Penicillin binding protein ClpS-like domain Penicillin binding protein ClpS-like domain
e2wadC4 C:310-380,C:521-680 Profilin-like a+b domain in beta-lactamase/transpeptidase-like proteins a+b domain in beta-lactamase/transpeptidase-like proteins
e2wadC2 C:381-520 alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins alpha-helical domain in beta-lactamase/transpeptidase-like proteins

Structural contacts of domain e2wadB6 of H-group "Penicillin binding protein dimerisation domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2wadC4 B:X,Y-1,Z->C:x,y,z a+b domain in beta-lactamase/transpeptidase-like proteins Interaction Interface Pymol
e2wadC2 B:X,Y-1,Z->C:x,y,z alpha-helical domain in beta-lactamase/transpeptidase-like proteins Interaction Interface Pymol
e2wadA4 B:x,y,z->A:X-1,Y,Z Penicillin binding protein ClpS-like domain Interaction Interface Pymol
e2wadC1 B:x,y,z->C:-Y-1,X-Y,Z+1/3 Penicillin binding protein dimerisation domain Interaction Interface Pymol
e2wadA6 B:-Y+1,X-Y,Z+1/3->A:x,y,z Penicillin binding protein dimerisation domain Interaction Interface Pymol