Domain ID e2wk5B2

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  • A: a+b complex topology
  • X: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • H: alpha/beta-Hammerhead/Barrel-sandwich hybrid
  • T: Pyrimidine nucleoside phosphorylase C-terminal domain
  • F: PYNP_C
UID: 000367334
Type: Automatic domain
Parent: e2tptA2
Range: B:374-481
PDB: 2wk5
PDB Description: THYMIDINE PHOSPHORYLASE
UniProt: P19971
Hsap BLAST neighbor: P19971
Species: Homo sapiens

Structure of domain e2wk5B2

Domains in the same chain:

e2wk5B1 B:32-102 Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N
e2wk5B3 B:103-373 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
e2wk5B2 B:374-481 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Pyrimidine nucleoside phosphorylase C-terminal domain

Domains in the same PDB:

e2wk5A1 A:32-102 Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N
e2wk5A3 A:103-373 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
e2wk5A2 A:374-480 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Pyrimidine nucleoside phosphorylase C-terminal domain
e2wk5B1 B:32-102 Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N
e2wk5B3 B:103-373 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
e2wk5B2 B:374-481 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Pyrimidine nucleoside phosphorylase C-terminal domain
e2wk5C1 C:33-102 Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N
e2wk5C3 C:103-373 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
e2wk5C2 C:374-480 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Pyrimidine nucleoside phosphorylase C-terminal domain
e2wk5D1 D:34-101 Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N
e2wk5D3 D:103-373 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
e2wk5D2 D:374-480 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Pyrimidine nucleoside phosphorylase C-terminal domain

Structural contacts of domain e2wk5B2 of H-group "alpha/beta-Hammerhead/Barrel-sandwich hybrid":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2wk5D1 B:-X+1,Y-1/2,-Z+2->D:x,y,z Nucleoside phosphorylase/phosphoribosyltransferase-N Interaction Interface Pymol
e2wk5A3 B:X,Y,Z-1->A:x,y,z Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Interaction Interface Pymol
e2wk5B3 B:x,y,z->B:-X+1,Y-1/2,-Z+2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Interaction Interface Pymol
e2wk5B2 B:x,y,z->B:-X+1,Y-1/2,-Z+2 alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e2wk5B3 B:-X+1,Y-1/2,-Z+2->B:x,y,z Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Interaction Interface Pymol
e2wk5B2 B:-X+1,Y-1/2,-Z+2->B:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e2wk5D3 B:x,y,z->D:-X+1,Y-1/2,-Z+2 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Interaction Interface Pymol