Domain ID e2wnrD4

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  • A: a+b two layers
  • X: Ribosomal protein S5 domain 2-like
  • H: Ribosomal protein S5 domain 2-like
  • T: Ribosomal protein S5 domain 2-like
  • F: RNase_PH
UID: 001178603
Type: Automatic domain
Parent: e2je6B2
Range: D:16-152
Ligands: PO4
PDB: 2wnr
PDB Description: PROBABLE EXOSOME COMPLEX EXONUCLEASE 1
UniProt: O26779
Hsap BLAST neighbor: Q9NPD3
Species: Methanothermobacter thermautotrophicus

Structure of domain e2wnrD4

Domains in the same chain:

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e2wnrD4 D:16-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2wnrD3 D:153-236 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Domains in the same PDB:

e2wnrA3 A:9-188 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2wnrA1 A:188-269 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2wnrB2 B:15-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2wnrB1 B:154-236 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2wnrC3 C:13-188 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2wnrC1 C:188-270 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2wnrD4 D:16-152 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2wnrD3 D:153-236 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2wnrE4 E:21-164 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2wnrE3 E:188-270 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2
e2wnrF2 F:14-153 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e2wnrF1 F:154-237 Ribonuclease PH domain 2-like Ribonuclease PH domain 2 Ribonuclease PH domain 2

Structural contacts of domain e2wnrD4 of H-group "Ribosomal protein S5 domain 2-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2wnrC3 D:x,y,z->C:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2wnrC1 D:x,y,z->C:X,Y,Z Ribonuclease PH domain 2 Interaction Interface Pymol
e2wnrA1 D:x,y,z->A:X,Y,Z Ribonuclease PH domain 2 Interaction Interface Pymol
e2wnrA3 D:x,y,z->A:X,Y,Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2wnrF2 D:x,y,z->F:X-1/2,-Y+1/2,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e2wnrE3 D:x,y,z->E:X-1/2,-Y+1/2,-Z Ribonuclease PH domain 2 Interaction Interface Pymol