Domain ID e2wtzB8

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  • A: a/b three-layered sandwiches
  • X: P-loop domains-like
  • H: P-loop domains-related
  • T: P-loop containing nucleoside triphosphate hydrolases
  • F: Mur_ligase_M
UID: 001184173
Type: Automatic domain
Parent: e1j6uA2
Range: B:142-373
Ligands: MG UAG
PDB: 2wtz
PDB Description: UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE- -2,6-DIAMINOPIMELATE LIGASE
UniProt: P9WJL3
Species:

Structure of domain e2wtzB8

Domains in the same chain:

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e2wtzB9 B:26-141 MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like
e2wtzB8 B:142-373 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2wtzB7 B:374-533 MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain

Domains in the same PDB:

e2wtzA3 A:26-140 MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like
e2wtzA2 A:141-373 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2wtzA1 A:374-533 MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain
e2wtzB9 B:26-141 MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like
e2wtzB8 B:142-373 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2wtzB7 B:374-533 MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain
e2wtzC3 C:24-141 MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like
e2wtzC2 C:142-373 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2wtzC1 C:374-505 MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain
e2wtzD6 D:26-141 MurF and HprK N-domain-like MurF and HprK N-domain-like MurF and HprK N-domain-like
e2wtzD5 D:142-373 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e2wtzD4 D:374-527 MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain MurD-like peptide ligases, peptide-binding domain

Structural contacts of domain e2wtzB8 of H-group "P-loop domains-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2wtzA1 B:x,y,z->A:X,Y,Z MurD-like peptide ligases, peptide-binding domain Interaction Interface Pymol
e2wtzD5 B:X,Y,Z->D:x,y,z P-loop domains-related Interaction Interface Pymol
e2wtzD6 B:X,Y,Z->D:x,y,z MurF and HprK N-domain-like Interaction Interface Pymol
e2wtzC2 B:X,Y,Z-1->C:x,y,z P-loop domains-related Interaction Interface Pymol
e2wtzC3 B:X,Y,Z-1->C:x,y,z MurF and HprK N-domain-like Interaction Interface Pymol