Domain ID e2x7jD3

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  • A: a/b three-layered sandwiches
  • X: Thiamin diphosphate-binding fold (THDP-binding)
  • H: Thiamin diphosphate-binding fold (THDP-binding)
  • T: Thiamin diphosphate-binding fold (THDP-binding)
  • F: TPP_enzyme_C
UID: 000395521
Type: Automatic domain
Parent: e1pvdA3
Range: D:374-580
Ligands: EDO MN SO4 TPP
PDB: 2x7j
PDB Description: 2-SUCCINYL-5-ENOLPYRUVYL-6-HYDROXY-3-CYCLOHEXENE -1-CARBOXYLATE SYNTHASE
UniProt: P23970
Species: Bacillus subtilis

Structure of domain e2x7jD3

Domains in the same chain:

e2x7jD2 D:2-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2x7jD4 D:200-370 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2x7jD3 D:374-580 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Domains in the same PDB:

e2x7jA1 A:2-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2x7jA3 A:200-370 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2x7jA4 A:374-580 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2x7jB2 B:2-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2x7jB4 B:200-370 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2x7jB3 B:374-580 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2x7jC2 C:2-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2x7jC4 C:200-370 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2x7jC3 C:374-578 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2x7jD2 D:2-197 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)
e2x7jD4 D:200-370 Rossmann-like Rossmann-related DHS-like NAD/FAD-binding domain
e2x7jD3 D:374-580 Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding)

Structural contacts of domain e2x7jD3 of H-group "Thiamin diphosphate-binding fold (THDP-binding)":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2x7jC2 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2x7jC3 D:x,y,z->C:X,Y,Z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2x7jC3 D:X-1/2,-Y-1/2,-Z->A:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2x7jB3 D:x,y,z->B:-X+1,Y-1/2,-Z-1/2 Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol
e2x7jA4 D:X-1,Y,Z->A:x,y,z Thiamin diphosphate-binding fold (THDP-binding) Interaction Interface Pymol