Domain ID e2xdeB1

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  • A: alpha bundles
  • X: Retrovirus capsid protein
  • H: Retrovirus capsid protein N-terminal domain
  • T: Retrovirus capsid protein N-terminal domain
  • F: Gag_p24
UID: 000408909
Type: Automatic domain
Parent: e2pxrC1
Range: B:1-146
Ligands: 1B0
PDB: 2xde
PDB Description: GAG POLYPROTEIN
UniProt: P12497
Species: Human immunodeficiency virus 1

Structure of domain e2xdeB1

Structural contacts of domain e2xdeB1 of H-group "Retrovirus capsid protein N-terminal domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2xdeA1 B:-X+1,Y-1/2,-Z+1->A:x,y,z Retrovirus capsid protein N-terminal domain Interaction Interface Pymol
e2xdeA1 B:-X+1,Y-1/2,-Z->A:x,y,z Retrovirus capsid protein N-terminal domain Interaction Interface Pymol
e2xdeA1 B:x,y,z->A:X,Y,Z Retrovirus capsid protein N-terminal domain Interaction Interface Pymol
e2xdeA1 B:X-1,Y,Z->A:x,y,z Retrovirus capsid protein N-terminal domain Interaction Interface Pymol
e2xdeB1 B:x,y,z->B:X-1,Y,Z Retrovirus capsid protein N-terminal domain Interaction Interface Pymol
e2xdeB1 B:X-1,Y,Z->B:x,y,z Retrovirus capsid protein N-terminal domain Interaction Interface Pymol
e2xdeA1 B:X-1,Y,Z+1->A:x,y,z Retrovirus capsid protein N-terminal domain Interaction Interface Pymol
e2xdeA1 B:x,y,z->A:X,Y,Z-1 Retrovirus capsid protein N-terminal domain Interaction Interface Pymol
e2xdeA1 B:-X,Y-1/2,-Z->A:x,y,z Retrovirus capsid protein N-terminal domain Interaction Interface Pymol
e2xdeA1 B:-X,Y-1/2,-Z+1->A:x,y,z Retrovirus capsid protein N-terminal domain Interaction Interface Pymol
e2xdeB1 B:x,y,z->B:X,Y,Z-1 Retrovirus capsid protein N-terminal domain Interaction Interface Pymol
e2xdeB1 B:X,Y,Z-1->B:x,y,z Retrovirus capsid protein N-terminal domain Interaction Interface Pymol