Domain ID e2xgpB2

Download files:
  • A: a+b two layers
  • X: Reverse ferredoxin
  • H: Lesion bypass DNA polymerase (Y-family), little finger domain
  • T: Lesion bypass DNA polymerase (Y-family), little finger domain
  • F: IMS_C
UID: 000404694
Type: Automatic domain
Parent: e1jx4A2
Range: B:390-510
Ligands: CA
PDB: 2xgp
PDB Description: DNA POLYMERASE ETA
UniProt: Q04049
Species: Saccharomyces cerevisiae

Structure of domain e2xgpB2

Domains in the same chain:

Download Pymol

e2xgpB7 B:-1-44,B:128-297 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2xgpB6 B:45-127 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e2xgpB5 B:298-389 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2xgpB2 B:390-510 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Domains in the same PDB:

e2xgpA7 A:0-44,A:128-297 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2xgpA6 A:45-127 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e2xgpA5 A:298-389 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2xgpA2 A:390-510 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain
e2xgpB7 B:-1-44,B:128-297 Alpha-beta plaits Adenylyl and guanylyl cyclase catalytic domain-like Adenylyl and guanylyl cyclase catalytic domain-like
e2xgpB6 B:45-127 Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like Hypothetical protein Ta1206-like
e2xgpB5 B:298-389 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2xgpB2 B:390-510 Reverse ferredoxin Lesion bypass DNA polymerase (Y-family), little finger domain Lesion bypass DNA polymerase (Y-family), little finger domain

Structural contacts of domain e2xgpB2 of H-group "Lesion bypass DNA polymerase (Y-family), little finger domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2xgpA7 B:x,y,z->A:X,Y,Z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2xgpA7 B:-Y-1/2,X-1/2,Z+1/4->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2xgpA5 B:x,y,z->A:Y,X,-Z SAM/DNA-glycosylase Interaction Interface Pymol