ECOD: domain e2xr1B5

Domain ID e2xr1B5

A: a/b three-layered sandwiches
X: P-loop domains-like
H: P-loop domains-related
T: P-loop containing nucleoside triphosphate hydrolases
F: Beta-Casp

UID:	001499757
Type:	Automatic domain
Parent:	e2dkfA3
Range:	B:142-180,B:387-578
PDB:	2xr1
PDB Description:	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100 KD SUBUNIT
UniProt:	Q8PZ03
Hsap BLAST neighbor:	Q5TA45
Species:	Methanosarcina mazei

Domain
In chain context
In PDB context

Structure of domain e2xr1B5

Domains in the same chain:

Download Pymol

e2xr1B2	B:1-68	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e2xr1B3	B:74-141	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e2xr1B5	B:142-180,B:387-578	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2xr1B4	B:181-386,B:579-637	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase

Domains in the same PDB:

e2xr1A3	A:3-70	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e2xr1A2	A:71-141	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e2xr1A5	A:142-180,A:387-578	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2xr1A4	A:181-386,A:579-637	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase
e2xr1B2	B:1-68	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e2xr1B3	B:74-141	Alpha-lytic protease prodomain-like	KH-domains	Prokaryotic type KH domain (KH-domain type II)
e2xr1B5	B:142-180,B:387-578	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e2xr1B4	B:181-386,B:579-637	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase	Metallo-hydrolase/oxidoreductase

Structural contacts of domain e2xr1B5 of H-group "P-loop domains-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2xr1A4	B:x,y,z->A:X,Y,Z	Metallo-hydrolase/oxidoreductase	Interaction Interface Pymol
e2xr1A2	B:x,y,z->A:-X,Y-1/2,-Z	KH-domains	Interaction Interface Pymol
e2xr1A4	B:x,y,z->A:-X,Y-1/2,-Z	Metallo-hydrolase/oxidoreductase	Interaction Interface Pymol
e2xr1A5	B:x,y,z->A:-X,Y-1/2,-Z	P-loop domains-related	Interaction Interface Pymol
e2xr1A4	B:-X,Y-1/2,-Z->A:x,y,z	Metallo-hydrolase/oxidoreductase	Interaction Interface Pymol
e2xr1A3	B:X,Y,Z-1->A:x,y,z	KH-domains	Interaction Interface Pymol
e2xr1A2	B:X-1,Y,Z-1->A:x,y,z	KH-domains	Interaction Interface Pymol