Domain ID e2xrfB1

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  • A: a/b three-layered sandwiches
  • X: Phosphorylase/hydrolase-like
  • H: Peptidyl-tRNA hydrolase-like
  • T: Peptidyl-tRNA hydrolase-like
  • F: PNP_UDP_1
UID: 000401879
Type: Automatic domain
Parent: e3pnpA1
Range: B:23-315
Ligands: GOL MG URA
PDB: 2xrf
PDB Description: URIDINE PHOSPHORYLASE 2
UniProt: O95045
Hsap BLAST neighbor: O95045
Species: Homo sapiens

Structure of domain e2xrfB1

Structural contacts of domain e2xrfB1 of H-group "Peptidyl-tRNA hydrolase-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2xrfC1 B:X,Y,Z->C:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e2xrfC1 B:-Y-1,X-Y-1,Z+1/3->C:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e2xrfA1 B:x,y,z->A:X,Y,Z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e2xrfA1 B:x,y,z->A:-X,-X+Y,-Z+1/3 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e2xrfC1 B:-X-1,-X+Y-1,-Z+1/3->C:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e2xrfB1 B:x,y,z->B:-X,-X+Y,-Z+1/3 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e2xrfB1 B:-X,-X+Y,-Z+1/3->B:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e2xrfA1 B:x,y,z->A:-X-1,-X+Y-1,-Z+1/3 Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e2xrfC1 B:-X,-X+Y,-Z+1/3->C:x,y,z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol
e2xrfA1 B:x,y,z->A:X,Y-1,Z Peptidyl-tRNA hydrolase-like Interaction Interface Pymol