Domain ID e2xy5A4

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: DNA_polI_exo1
UID: 000425207
Type: Automatic domain
Parent: e2hhvA4
Range: A:296-468
Ligands: MRD SO4 SWE
PDB: 2xy5
PDB Description: DNA POLYMERASE I
UniProt: E1C9K5
Species: Geobacillus stearothermophilus

Structure of domain e2xy5A4

Structural contacts of domain e2xy5A4 of H-group "Ribonuclease H-like":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2xy5A3 A:-X,Y-1/2,-Z+1/2->A:x,y,z Adenylyl and guanylyl cyclase catalytic domain-like Interaction Interface Pymol
e2xy5A1 A:-X,Y-1/2,-Z+1/2->A:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e2xy5A1 A:-X+1/2,-Y,Z-1/2->A:x,y,z helical bundle in Bacillus stearothermophilus-like DNA polymerase I Interaction Interface Pymol
e2xy5A2 A:-X+1/2,-Y,Z-1/2->A:x,y,z "fingers" domain in bacteriophage RB69-like DNA polymerase I Interaction Interface Pymol