Domain ID e2y0dB2

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  • A: a/b three-layered sandwiches
  • X: Rossmann-like
  • H: Rossmann-related
  • T: NAD(P)-binding Rossmann-fold domains
  • F: UDPG_MGDP_dh_N
UID: 001396686
Type: Automatic domain
Parent: e1mv8A2
Range: B:0-202
Ligands: UGA
PDB: 2y0d
PDB Description: UDP-GLUCOSE DEHYDROGENASE
UniProt: C9E261
Hsap BLAST neighbor: O60701
Species: Burkholderia cepacia

Structure of domain e2y0dB2

Domains in the same chain:

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e2y0dB2 B:0-202 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e2y0dB4 B:207-302 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e2y0dB3 B:303-453 Rossmann-like Rossmann-related UDPG/MGDP dehydrogenase C-terminal domain

Domains in the same PDB:

e2y0dA4 A:0-202 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e2y0dA1 A:207-302 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e2y0dA3 A:303-456 Rossmann-like Rossmann-related UDPG/MGDP dehydrogenase C-terminal domain
e2y0dB2 B:0-202 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e2y0dB4 B:207-302 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e2y0dB3 B:303-453 Rossmann-like Rossmann-related UDPG/MGDP dehydrogenase C-terminal domain
e2y0dC2 C:0-202 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e2y0dC4 C:207-302 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e2y0dC3 C:303-453 Rossmann-like Rossmann-related UDPG/MGDP dehydrogenase C-terminal domain
e2y0dD4 D:0-202 Rossmann-like Rossmann-related NAD(P)-binding Rossmann-fold domains
e2y0dD2 D:207-302 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like
e2y0dD1 D:303-455 Rossmann-like Rossmann-related UDPG/MGDP dehydrogenase C-terminal domain

Structural contacts of domain e2y0dB2 of H-group "Rossmann-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2y0dA1 B:x,y,z->A:X,Y,Z 6-phosphogluconate dehydrogenase C-terminal domain-like Interaction Interface Pymol
e2y0dD2 B:X,Y,Z->D:x,y,z 6-phosphogluconate dehydrogenase C-terminal domain-like Interaction Interface Pymol
e2y0dD1 B:X,Y,Z->D:x,y,z Rossmann-related Interaction Interface Pymol
e2y0dD2 B:x,y,z->D:X-1/2,-Y+1/2,-Z 6-phosphogluconate dehydrogenase C-terminal domain-like Interaction Interface Pymol
e2y0dD1 B:x,y,z->D:X-1/2,-Y+1/2,-Z Rossmann-related Interaction Interface Pymol
e2y0dC2 B:X,Y,Z->C:x,y,z Rossmann-related Interaction Interface Pymol
e2y0dC3 B:x,y,z->C:-X-1/2,-Y,Z-1/2 Rossmann-related Interaction Interface Pymol
e2y0dC4 B:x,y,z->C:X-1/2,-Y+1/2,-Z 6-phosphogluconate dehydrogenase C-terminal domain-like Interaction Interface Pymol